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1.1 ! root 1: GBREL.TXT Genetic Sequence Data Bank ! 2: 15 December 1990 ! 3: ! 4: GenBank(R) Release 66.0 ! 5: ! 6: Distribution Tape Release Notes ! 7: ! 8: 41057 loci, 51306092 bases, from 50908 reported sequences ! 9: ! 10: This document describes the data written on GenBank distribution ! 11: tapes. The examples used are from the current release. If you have any ! 12: questions or comments about the data bank, the distribution tape, or ! 13: this document, please call (415)962-7364 or write to: ! 14: ! 15: GenBank ! 16: c/o IntelliGenetics Inc. ! 17: 700 East El Camino Real ! 18: Mountain View, California 94040 ! 19: USA ! 20: ! 21: The electronic mail address is: [email protected] ! 22: ! 23: 1. INTRODUCTION ! 24: ! 25: 1.1 Release 66.0 ! 26: ! 27: Release 66.0 has 41,057 loci representing 51,306,092 bases. Release ! 28: 65.0 had 39,553 loci with 49,179,285 bases. Release 66.0 thus is 4.3% ! 29: larger in bases than Release 65.0. A statistical summary of Release ! 30: 66.0 is presented in Appendix A. ! 31: ! 32: 1.2 Organization of This Document ! 33: ! 34: This introduction notes the changes to GenBank since the last release. ! 35: The next section describes the contents of the tape files. The third ! 36: section illustrates the formats of the tape files. The fourth section ! 37: describes the proposed changes planned for future releases. The fifth ! 38: section describes known problems in this release. The last section ! 39: contains notes about the administration of GenBank. ! 40: ! 41: 1.3 Recent Changes in the Data Bank ! 42: ! 43: 1.3.1 Changes in This Release ! 44: ! 45: 1.3.1.1 Data from EMBL and the DNA Data Bank of Japan ! 46: ! 47: New sequence data from EMBL Release 23 have been incorporated into ! 48: this release of GenBank. Sequence data from Release 7.0 of the DNA ! 49: Data Bank of Japan (DDBJ) have also been incorporated into this ! 50: release. Entries with accession numbers beginning with the letter `D' ! 51: have been created and annotated by DDBJ. Release 66 contains ! 52: approximately 467 entries from DDBJ. ! 53: ! 54: 1.3.1.2 Changes in the Source and Definition Lines ! 55: ! 56: The Source and Definition lines for new entries are now generated by ! 57: the GenBank database software from information in the GenBank ! 58: relational database, rather than being entered by an annotator. ! 59: ! 60: These lines include information such as the organism name, the name ! 61: and type of the molecule, and the gene product. An example is: ! 62: ! 63: DEFINITION A.auricula-judae (mushroom) 5S ribosomal RNA. ! 64: SOURCE A.auricula-judae (mushroom) ribosomal RNA. ! 65: ! 66: In Release 66.0, these lines contain the same information, but have a ! 67: format that is less English-like. This change only applies to new ! 68: entries. ! 69: ! 70: 1.3.1.3 Changes in Locus Names ! 71: ! 72: Several locus names have been changed to make the application of the ! 73: organism codes consistent throughout the data bank. These changes are ! 74: listed in Appendix B. ! 75: ! 76: 1.3.1.4 Date on LOCUS Line ! 77: ! 78: The date on the LOCUS line now indicates the actual date on which the ! 79: data first appeared in the GenBank relational database or the date of ! 80: the last revision. Previously, this was the date of the release in ! 81: which the data first appeared or was revised. ! 82: ! 83: 1.3.1.5 Release 66 "Close-of-Data" ! 84: ! 85: The freeze date for data to appear in Release 66 was November 22, ! 86: 1990. This is the date on which flatfile generation began. The process ! 87: of converting the data from the relational database into the flatfile ! 88: ASCII format takes several days to complete. New data continue to be ! 89: added during this time; if data are added before their division has ! 90: been processed, they may appear in the release (even though dated ! 91: after the freeze date). ! 92: ! 93: 1.3.2 Changes in Earlier Releases ! 94: ! 95: The following changes in GenBank format were implemented in previous ! 96: releases and described in their Release Notes. These changes are ! 97: described here again for those users who may not have received those ! 98: releases. ! 99: ! 100: 1.3.2.1 International Feature Table Format (Release 64) ! 101: ! 102: The EMBL Data Library and GenBank, with the assistance of the DNA Data ! 103: Bank of Japan, have developed a standard feature table to be ! 104: implemented by all three data banks. The new feature table is designed ! 105: to be more understandable and useful. The common feature table will ! 106: also make software development easier and allow simpler data ! 107: conversion between data banks. ! 108: ! 109: The new feature table was implemented in Release 64.0 (June 1990). ! 110: Details of the new format are described in a document entitled: `The ! 111: DDBJ/EMBL/GenBank feature table: Definition, Version 1.01, September ! 112: 10, 1988.' Copies of this document are available on request at the ! 113: address given on the first page of these release notes. ! 114: ! 115: Section 3.5.11 provides further information on the new feature table ! 116: format. ! 117: ! 118: 1.3.2.2 Minor Differences in GenBank Format (Release 64) ! 119: ! 120: Beginning in the second quarter of 1990, the GenBank data bank has ! 121: been maintained in relational format. The data bank will continue to ! 122: be distributed in the standard flatfile format described in this ! 123: document. Starting with Release 64.0, the standard flatfile GenBank ! 124: data bank (generated from the relational data base tables) contains a ! 125: few minor format differences from previous releases. These differences ! 126: are described in the remainder of this section. ! 127: ! 128: Information about the relational database format can be requested by ! 129: calling (505) 665-2177 or by writing to: ! 130: ! 131: GenBank ! 132: Group T-10, Mail Stop K710 ! 133: Los Alamos National Laboratories ! 134: Los Alamos, NM 87545 ! 135: ! 136: 1.3.2.2.1 Keyword Order ! 137: ! 138: The order of keyword phrases on the KEYWORDS line is alphabetical. ! 139: ! 140: 1.3.2.2.2 Accession Number Order ! 141: ! 142: The order of non-primary accession numbers on the ACCESSION line is ! 143: not necessarily preserved from one release to the next. ! 144: ! 145: 1.3.2.2.3 Reference Order ! 146: ! 147: The order of the references in an entry is not necessarily preserved ! 148: from one release to the next. ! 149: ! 150: 1.3.2.2.4 Changes in Taxonomy ! 151: ! 152: The taxonomic classification of many organisms was changed to ensure ! 153: uniformity throughout the data bank. A few organisms are listed as ! 154: unclassified as a result of inconsistencies in the data. The ! 155: annotation staff is addressing these inconsistencies. ! 156: ! 157: 1.3.2.2.5 Inconsistencies in Reference Information ! 158: ! 159: Inconsistencies in reference information have not been preserved. All ! 160: occurrences of a single reference are identical, usually matching the ! 161: first occurrence in the data bank. ! 162: ! 163: 1.3.2.2.6 Formatting Changes ! 164: ! 165: Certain text fields (for example, definition, comment, title, etc.) ! 166: have been reformatted slightly, in some entries. In most cases, the ! 167: actual text remains unchanged. ! 168: ! 169: 1.3.2.2.7 Comment Field Formatting ! 170: ! 171: Any special formatting in the comment field may not be preserved. This ! 172: may be corrected in future releases. ! 173: ! 174: 1.3.2.2.8 Reference Line Changes ! 175: ! 176: The reference lines for sites and review papers have been slightly ! 177: modified. All of these papers are classified as `sites', with the ! 178: original text describing the citation appearing in the comment field. ! 179: Also, when a reference is cited elsewhere in an entry, in most cases ! 180: the entire citation appears in square brackets. Previously, only the ! 181: number of the reference appeared in square brackets. ! 182: ! 183: 2. ORGANIZATION OF TAPE FILES ! 184: ! 185: 2.1 Tape Formats ! 186: ! 187: The GenBank data bank is available in three formats on three different ! 188: physical media (see Section 5.4 for further details on which formats ! 189: are available on each medium), and on CD ROM. ! 190: ! 191: GenBank is available on 9-track, unlabelled, industry-standard, ASCII ! 192: magnetic tapes. These tapes have been written in fixed-length records ! 193: of 80 characters, each with no carriage-return or line-feed ! 194: characters. Each record corresponds to one line in the data bank; ! 195: trailing blanks have been added to the lines to make them all exactly ! 196: 80 characters long. (A completely blank line is therefore represented ! 197: by 80 blanks.) ! 198: ! 199: The label affixed to the tape reel indicates its block size and ! 200: density. If no specifications are received from you, the tape is ! 201: written with a fixed block size of 160 records (12,800 characters) and ! 202: a density of 6250 bpi (bits per inch). We also offer tapes written at ! 203: a density of 1600 bpi and a block size of 40 records (3200 ! 204: characters). ! 205: ! 206: GenBank is also available as a VAX/VMS Backup saveset (on 9-track ! 207: tapes or TK-50 cartridges) or as compressed Unix tar archives (on 9 ! 208: track tapes and Sun 1/4" QIC 24 format tape cartridges). ! 209: ! 210: The GenBank tape distribution files are also available on ISO-9660 ! 211: compatible CD ROM. The data are written as ASCII files with variable ! 212: length records. Each record corresponds to one line in the data bank ! 213: and ends with a carriage return and a line-feed character. ! 214: ! 215: The data on the tapes have both uppercase and lowercase characters. ! 216: Upon special request, the unlabelled, 9 track tapes can be written ! 217: using uppercase characters only (Section 6.4 specifies which formats ! 218: are available in uppercase only). ! 219: ! 220: 2.2 Files ! 221: ! 222: GenBank consists of twenty-two files in all magnetic tape ! 223: distributions. The list which follows describes each of the files ! 224: included in the distribution. In the following sections there are ! 225: additional lists indicating the breakdown of files on the various ! 226: media and formats. ! 227: ! 228: 2.2.1 File Descriptions ! 229: ! 230: 1. GBREL.TXT - Release notes (this document). ! 231: 2. GBSDR.TXT - Short directory of the data bank. ! 232: 3. GBNEW.TXT - List of new or substantially revised entries. ! 233: 4. GBACC.IDX - Index of the entries according to accession number. ! 234: 5. GBKEY.IDX - Index of the entries according to keyword phrase. ! 235: 6. GBAUT.IDX - Index of the entries according to author. ! 236: 7. GBJOU.IDX - Index of the entries according to journal citation. ! 237: 8. GBHGM.IDX - Index of the entries according to gene symbol. ! 238: 9. GBDAT.FRM - Forms for submitting sequences or corrections to GenBank. ! 239: 10. GBPRI.SEQ - Primate sequence entries. ! 240: 11. GBROD.SEQ - Rodent sequence entries. ! 241: 12. GBMAM.SEQ - Other mammalian sequence entries. ! 242: 13. GBVRT.SEQ - Other vertebrate sequence entries. ! 243: 14. GBINV.SEQ - Invertebrate sequence entries. ! 244: 15. GBPLN.SEQ - Plant sequence entries (including fungi and algae). ! 245: 16. GBORG.SEQ - Eukaryotic organelle sequence entries. ! 246: 17. GBBCT.SEQ - Bacterial sequence entries. ! 247: 18. GBRNA.SEQ - Structural RNA sequence entries. ! 248: 19. GBVRL.SEQ - Viral sequence entries. ! 249: 20. GBPHG.SEQ - Phage sequence entries. ! 250: 21. GBSYN.SEQ - Synthetic and chimeric sequence entries. ! 251: 22. GBUNA.SEQ - Unannotated sequence entries. ! 252: ! 253: 2.2.2 Fixed Length Records ! 254: ! 255: Approximately 197 MB of disk space is required for the Release 66.0 ! 256: files in fixed-length record format. All the files fit on two 6250 bpi ! 257: tapes and are divided between the tapes as follows. ! 258: ! 259: Tape 1 ! 260: ! 261: GBREL.TXT ! 262: GBSDR.TXT ! 263: GBNEW.TXT ! 264: GBACC.IDX ! 265: GBKEY.IDX ! 266: GBAUT.IDX ! 267: GBJOU.IDX ! 268: GBHGM.IDX ! 269: GBDAT.FRM ! 270: GBPRI.SEQ ! 271: GBROD.SEQ ! 272: GBMAM.SEQ ! 273: GBVRT.SEQ ! 274: GBINV.SEQ ! 275: GBPLN.SEQ ! 276: GBORG.SEQ ! 277: ! 278: ! 279: Tape 2 ! 280: ! 281: GBBCT.SEQ ! 282: GBRNA.SEQ ! 283: GBVRL.SEQ ! 284: GBPHG.SEQ ! 285: GBSYN.SEQ ! 286: GBUNA.SEQ ! 287: ! 288: At 1600 bpi, seven tapes are required and the files are divided among ! 289: the tapes as follows: ! 290: ! 291: Tape 1 Tape 4 ! 292: ! 293: GBREL.TXT GBVRT.SEQ ! 294: GBSDR.TXT GBBCT.SEQ ! 295: GBNEW.TXT ! 296: GBACC.IDX ! 297: GBKEY.IDX Tape 5 ! 298: GBAUT.IDX ! 299: GBJOU.IDX GBINV.SEQ ! 300: GBHGM.IDX GBPLN.SEQ ! 301: GBDAT.FRM GBPHG.SEQ ! 302: GBMAM.SEQ ! 303: ! 304: Tape 6 ! 305: Tape 2 ! 306: GBVRL.SEQ ! 307: GBPRI.SEQ GBSYN.SEQ ! 308: ! 309: Tape 3 Tape 7 ! 310: ! 311: GBROD.SEQ GBUNA.SEQ ! 312: GBORG.SEQ ! 313: GBRNA.SEQ ! 314: ! 315: ! 316: 2.2.3 VAX/VMS Backup Saveset ! 317: ! 318: Saveset files are in directory order rather than in the order shown ! 319: for the formats above. The files are in compressed format (See Section ! 320: 1.3.1.2 for details). Approximately 139 MB of disk space is required ! 321: for Release 66.0 files in VAX/VMS Backup Saveset format. The files ! 322: archived in the Backup Saveset use variable-length records, not the ! 323: 80-character fixed-length records described above. All files fit on ! 324: one 6250 bpi tape. At 1600 bpi, two tapes are required. The division ! 325: of the files between the two tapes was not available at the time these ! 326: Release Notes were prepared. The files will appear in the following ! 327: order: ! 328: ! 329: AAAREADME.TXT ! 330: DCOMPRESS.CLD ! 331: DCOMPRESS.EXE ! 332: DECMPRESS.COM ! 333: GBACC_IDX.Z ! 334: GBAUT_IDX.Z ! 335: GBBCT_SEQ.Z ! 336: GBDAT_FRM.Z ! 337: GBHGM_IDX.Z ! 338: GBINV_SEQ.Z ! 339: GBJOU_IDX.Z ! 340: GBKEY_IDX.Z ! 341: GBMAM_SEQ.Z ! 342: GBNEW_TXT.Z ! 343: GBORG_SEQ.Z ! 344: GBPHG_SEQ.Z ! 345: GBPLN_SEQ.Z ! 346: GBPRI_SEQ.Z ! 347: GBREL_TXT.Z ! 348: GBRNA_SEQ.Z ! 349: GBROD_SEQ.Z ! 350: GBSDR_TXT.Z ! 351: GBSYN_SEQ.Z ! 352: GBUNA_SEQ.Z ! 353: GBVRL_SEQ.Z ! 354: GBVRT_SEQ.Z ! 355: ! 356: NOTE: When the files are uncompressed (as instructed in Section 2.3) ! 357: the `.Z' will be removed from the end of the file name and the ! 358: characters after the underscore will become the file extension. For ! 359: example, `GBACC_IDX.Z' will be named `GBACC.IDX'. ! 360: ! 361: One TK-50 cartridge is required; the files are in directory order and ! 362: are compressed as described above. ! 363: ! 364: 2.2.4 Unix tar Format ! 365: ! 366: The files are compressed with the Unix compress utility before the tar ! 367: command is executed; they must therefore be uncompressed before use ! 368: (see Section 2.4 below for details). Approximately 45 MB of disk space ! 369: is required for the Release 66.0 files when in the compressed format; ! 370: the uncompressed files require approximately 139 MB. ! 371: ! 372: The tar file uses variable length records; the records are not padded ! 373: to 80 characters with space characters. To get fixed-length, ! 374: 80-character records, first uncompress the.Z files. Then use dd with ! 375: the conv=block and cbs=80 options set to filter the file. If you pad ! 376: the records, it adds approximately 58 MB of disk space. ! 377: ! 378: In the Unix tar file, the files are in directory order rather than in ! 379: the order shown for the fixed-length record formats. In addition, the ! 380: file names are in lowercase letters. All files fit on one 6250 bpi ! 381: tape or Sun cartridge. At 1600 bpi, two tapes are required, and the ! 382: files are divided between the tapes as follows: ! 383: ! 384: Unix Tar File Order: ! 385: ! 386: Tape 1 ! 387: ! 388: gbacc.idx.Z ! 389: gbaut.idx.Z ! 390: gbbct.seq.Z ! 391: gbdat.frm.Z ! 392: gbhgm.idx.Z ! 393: gbinv.seq.Z ! 394: gbjou.idx.Z ! 395: gbkey.idx.Z ! 396: gbmam.seq.Z ! 397: gbnew.txt.Z ! 398: gborg.seq.Z ! 399: gbphg.seq.Z ! 400: ! 401: ! 402: Tape 2 ! 403: ! 404: gbpln.seq.Z ! 405: gbpri.seq.Z ! 406: gbrel.txt.Z ! 407: gbrna.seq.Z ! 408: gbrod.seq.Z ! 409: gbsdr.txt.Z ! 410: gbsyn.seq.Z ! 411: gbuna.seq.Z ! 412: gbvrl.seq.Z ! 413: gbvrt.seq.Z ! 414: ! 415: NOTE: When the files are uncompressed the `.Z' extension is removed ! 416: from the file names. ! 417: ! 418: 2.2.5 File Sizes ! 419: ! 420: The following table indicates the approximate sizes of the individual ! 421: files in this release. Since minor changes to some of the files may ! 422: occur after the release notes are printed, these sizes should not be ! 423: used to determine ! 424: ! 425: file integrity. They are provided as an aid to planning only. The ! 426: columns in the table have the following meanings: ! 427: ! 428: (1) - Sizes (in bytes) of the fixed-length record files (described in ! 429: Section 2.2.2) ! 430: ! 431: (2) - Sizes (in bytes) of the compressed files included in the Unix ! 432: tarfile (Section 2.2.4) ! 433: ! 434: (3) - Sizes (in bytes) of the files in the Unix tarfile after ! 435: uncompression (Section 2.2.4) ! 436: ! 437: (4) - Sizes (in blocks) of the compressed files included in the VMS ! 438: Backup saveset (Section 2.2.3 and 2.4) ! 439: ! 440: (5) - Sizes (in blocks) of the files in the VMS Backup saveset after ! 441: decompression (Sections 2.2.3 and 2.3) ! 442: ! 443: ! 444: File (1) (2) (3) (4) (5)__ ! 445: ! 446: GBACC.IDX 3616640 558701 1641276 1101 3294 ! 447: GBAUT.IDX 9839040 1978063 5541281 4040 11106 ! 448: GBBCT.SEQ 20356960 4995239 15062023 10510 30263 ! 449: GBDAT.FRM 39600 8450 21155 19 43 ! 450: GBHGM.IDX 168160 42557 127617 86 254 ! 451: GBINV.SEQ 13488080 3145845 9751044 6643 19599 ! 452: GBJOU.IDX 4474400 750259 2454640 1530 4928 ! 453: GBKEY.IDX 3676480 866411 2497752 1754 4981 ! 454: GBMAM.SEQ 6563120 1524109 4708672 3223 9463 ! 455: GBNEW.TXT 96800 16960 55668 37 113 ! 456: GBORG.SEQ 5763760 1375541 4241530 2893 8524 ! 457: GBPHG.SEQ 2378720 560271 1671525 1179 3363 ! 458: GBPLN.SEQ 14084400 3392955 10325013 7124 20746 ! 459: GBPRI.SEQ 32726160 7473028 23428438 15823 47079 ! 460: GBREL.TXT 367680 96837 298595 201 600 ! 461: GBRNA.SEQ 4694720 821816 2794838 1798 5636 ! 462: GBROD.SEQ 30187600 6727065 21356518 14252 42920 ! 463: GBSDR.TXT 3289440 1074335 3285363 2181 6578 ! 464: GBSYN.SEQ 2838560 611437 1841890 1308 3706 ! 465: GBUNA.SEQ 11974000 2752439 8627808 5717 17370 ! 466: GBVRL.SEQ 18141760 4437537 13647843 9285 27420 ! 467: GBVRT.SEQ 7638320 1747319 5408466 3705 10877 ! 468: AAAREADME.TXT 2 2 ! 469: DCOMPRESS.CLD 4 4 ! 470: DCOMPRESS.EXE 150 150 ! 471: DECMPRESS.COM 2 2 ! 472: ! 473: ! 474: Totals 196404400 44957174 138788955 94567 279021 ! 475: ! 476: NOTE: The sizes of the CD ROM files are approximately the same as ! 477: those of the uncompressed Unix tar files (Column 3). The addition of ! 478: carriage-return/line-feed characters at the end of each line in the CD ! 479: ROM files increases the total size of the distribution by ! 480: approximately 3 Mb. ! 481: ! 482: 2.3 Loading Data Bank Files in VAX/VMS Backup Format ! 483: ! 484: In order to use the VAX/VMS Backup Saveset format, you must be running ! 485: release 5.0 or greater of the VMS operating system. If you are not ! 486: running release 5.0 or greater, you should order the unlabelled ASCII ! 487: format instead of VAX/VMS Backup. ! 488: ! 489: The following command should be used to load the saveset into the ! 490: current directory on your disk: ! 491: ! 492: BACKUP/LOG MSA0:GENBANK [] ! 493: ! 494: (NOTE: Replace `MSA0' with the identifier for your disk.) ! 495: ! 496: The following command should be used to uncompress the files. NOTE: If ! 497: you do not want to keep all of the files, delete those you do not want ! 498: before you run the uncompress procedure. The uncompress routine works ! 499: on all the files in the directory that have a `.Z' extension. ! 500: ! 501: @DECMPRESS ! 502: ! 503: The following commands were used to create the VAX/VMS Backup Saveset. ! 504: NOTE: The `...' indicates that the following line is a continuation ! 505: and should be typed without a break. ! 506: ! 507: For 6250 bpi tape: BACKUP/DENSITY=6250/BUFFER=5/VERIFY/INTERCHANGE/... ! 508: ! 509: LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK ! 510: ! 511: For 1600 bpi tape: BACKUP/DENSITY=1600/BUFFER=5/VERIFY/INTERCHANGE/... ! 512: ! 513: LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK ! 514: ! 515: For TK-50 cartridge: BACKUP/BUFFER=5/VERIFY/INTERCHANGE/... ! 516: ! 517: LIST=GB.LST GB1:[GENBANK.PROD]GB*.* TAPE:GENBANK ! 518: ! 519: 2.4 Loading Data Bank Files in Unix tar Format ! 520: ! 521: The following commands should be used to load the Unix tar files into ! 522: the current directory on your disk: ! 523: ! 524: tar xvfb /dev/rmt8 126 gb*.Z ! 525: ! 526: uncompress gb*.Z ! 527: ! 528: (NOTE: Replace `rmt8' with the identifier for your device.) ! 529: ! 530: The following command was used to write the tarfile on the ! 531: distribution tape: ! 532: ! 533: For 6250 and 1600 bpi tapes (execute the command twice, once for each ! 534: tape, for 1600 bpi): ! 535: ! 536: tar cvfb /dev/rmt8 20 gb*.Z ! 537: ! 538: For Sun cartridge: ! 539: ! 540: tar cvfb /dev/rst8 126 gb*.Z ! 541: ! 542: 3. FILE FORMATS ! 543: ! 544: 3.1 File Header Information ! 545: ! 546: Each of the twenty-two files on the distribution tape begins with the ! 547: same header, except for the first line, which contains the file name, ! 548: and the sixth line, which contains the title of the file. The first ! 549: line of the file contains the file name in character positions 1 to 9 ! 550: and the full data bank name (Genetic Sequence Data Bank) starting in ! 551: column 20. The brief names of the files in this release are listed in ! 552: section 2.2. ! 553: ! 554: The second line contains the date of the current release in the form ! 555: `day month year', beginning in position 26. The fourth line contains ! 556: the current GenBank release number. The release number appears in ! 557: positions 41 to 45 and consists of two numbers separated by a decimal ! 558: point. The number to the left of the decimal is the major release ! 559: number. The digit to the right of the decimal indicates the version of ! 560: the major release; it is zero for the first version. The sixth line ! 561: contains a title for the file. The eighth line lists the number of ! 562: entries (loci), number of bases (or base pairs), and number of reports ! 563: of sequences in this release of GenBank. These numbers are ! 564: right-justified at fixed positions. The number of entries appears in ! 565: positions 1 to 7, the number of bases in positions 15 to 22, and the ! 566: number of reports in positions 36 to 40. (There are more reports of ! 567: sequences than entries since reported sequences that overlap or ! 568: duplicate each other are combined into single entries.) The third, ! 569: fifth, seventh, and ninth lines are blank. ! 570: ! 571: 1 10 20 30 40 50 60 70 79 ! 572: ! 573: ---------+---------+---------+---------+---------+---------+---------+--------- ! 574: ! 575: GBACC.IDX Genetic Sequence Data Bank ! 576: 15 December 1990 ! 577: ! 578: GenBank(R) Release 66.0 ! 579: ! 580: Accession Number Index ! 581: ! 582: 41057 loci, 51306092 bases, from 50908 reported sequences ! 583: ! 584: ---------+---------+---------+---------+---------+---------+---------+--------- ! 585: ! 586: 1 10 20 30 40 50 60 70 79 ! 587: ! 588: Example 1. Sample File Header ! 589: ! 590: 3.2 Directory Files ! 591: ! 592: 3.2.1 Short Directory File ! 593: ! 594: The short directory file contains brief descriptions of all of the ! 595: sequence entries contained in this release. These descriptions are in ! 596: thirteen groups, one group for each of the thirteen sequence entry ! 597: data files. The first record at the beginning of a group of entries ! 598: contains the name of the group in uppercase characters, beginning in ! 599: position 21. The organism groups are PRIMATE, RODENT, OTHER MAMMAL, ! 600: OTHER VERTEBRATE, INVERTEBRATE, PLANT, ORGANELLE, BACTERIAL, ! 601: STRUCTURAL RNA, VIRAL, PHAGE, SYNTHETIC, or UNANNOTATED. The second ! 602: record is blank. ! 603: ! 604: Each record in the short directory contains the sequence entry name ! 605: (LOCUS) in the first 12 positions, followed by a brief definition of ! 606: the sequence beginning in column 13. The definition is truncated (at ! 607: the end of a word) to leave room at the right margin for at least one ! 608: space, the sequence length, and the letters `bp'. The length of the ! 609: sequence is printed right-justified to column 77, followed by the ! 610: letters `bp' in columns 78 and 79. The next-to-last record for a group ! 611: has `ZZZZZZZZZZ' in its first ten positions (where the entry name ! 612: would normally appear). The last record is a blank line. An example of ! 613: the short directory file format, showing the descriptions of the last ! 614: entries in the Other Vertebrate sequence data file and the first ! 615: entries of the Invertebrate sequence data file, is reproduced below: ! 616: ! 617: 1 10 20 30 40 50 60 70 79 ! 618: ! 619: ---------+---------+---------+---------+---------+---------+---------+--------- ! 620: ! 621: ZEFHOX21 Zebrafish Hox-2.1 gene homologue (ZF-21). 291bp ! 622: ZEFRZF21 Zebrafish mRNA for homeotic protein ZF-21. 2073bp ! 623: ZEFZF54 Zebrafish homeotic gene ZF-54. 246bp ! 624: ZEFZFEN Zebrafish engrailed-like homeobox sequence. 327bp ! 625: ZZZZZZZZZZ ! 626: ! 627: INVERTEBRATE ! 628: ! 629: ACAACTI Amoeba (A. castellanii) actin gene-i. 1571bp ! 630: ACAJJE A.castellanii 18S ribosomal RNA. 241bp ! 631: ACAJJEA A.castellanii 18S ribosomal RNA. 258bp ! 632: ACAJJEB A.castellanii 18S ribosomal RNA. 257bp ! 633: ! 634: ---------+---------+---------+---------+---------+---------+---------+--------- ! 635: ! 636: 1 10 20 30 40 50 60 70 79 ! 637: ! 638: Example 2. Short Directory File ! 639: ! 640: 3.2.2 New and Updated Entry File ! 641: ! 642: The directory of new and updated entries is a list of those entries ! 643: that have been newly added or that have undergone substantive revision ! 644: in this release. These entries are listed in the same order in which ! 645: they appear in the actual data files; they are divided into thirteen ! 646: groups, one group for each of the thirteen sequence entry data files. ! 647: The first record at the beginning of a group of entries designates ! 648: that group, beginning in position 21. The second record is blank and ! 649: the third record has asterisks in its first ten positions. Within each ! 650: group, the entries are listed alphabetically. For each entry, the new ! 651: and updated entry file gives the information included under the LOCUS ! 652: and DEFINITION keywords in the same format in which they appear in the ! 653: actual sequence entry; these categories are described in section ! 654: 3.5.2. After the last record of an entry comes a record containing ! 655: asterisks in its first ten positions. At the end of each group, a ! 656: dummy entry contains only a LOCUS line with the entry name ! 657: `ZZZZZZZZZZ'. Therefore, the next-to-last record has ten asterisks in ! 658: its first ten positions; the last record of the group is blank. ! 659: ! 660: The following excerpt from the current release shows the last new or ! 661: revised entry from the Other Vertebrate sequence data file, followed ! 662: by the first new or revised entry from the Invertebrate sequence data ! 663: file: ! 664: ! 665: 1 10 20 30 40 50 60 70 79 ! 666: ! 667: ---------+---------+---------+---------+---------+---------+---------+--------- ! 668: ! 669: ********** ! 670: LOCUS RANCRYR23 266 bp ds-DNA VRT 20-SEP-1990 ! 671: DEFINITION R.temporaria rho-crystallin gene, exon X. ! 672: ********** ! 673: LOCUS ZZZZZZZZZZ ! 674: ********** ! 675: ! 676: INVERTEBRATE ! 677: ! 678: ********** ! 679: LOCUS ACAJJE 241 bp ss-rRNA INV 05-NOV-1990 ! 680: DEFINITION A.castellanii 18S ribosomal RNA. ! 681: ********** ! 682: ! 683: ---------+---------+---------+---------+---------+---------+---------+--------- ! 684: ! 685: 1 10 20 30 40 50 60 70 79 ! 686: ! 687: Example 3. New and Updated Entry File ! 688: ! 689: 3.3 Index Files ! 690: ! 691: There are five files containing indices to the entries in this ! 692: release: ! 693: ! 694: Accession number index file ! 695: Keyword phrase index file ! 696: Author name index file ! 697: Journal citation index file ! 698: Gene symbol index file ! 699: ! 700: The index keys (accession numbers, keywords, authors, journals, and ! 701: gene symbols.) of an index are sorted alphabetically. (The index keys ! 702: for the keyword phrases and author names appear in uppercase ! 703: characters even though they appear in mixed case in the sequence ! 704: entries.) Under each index key, the names of the sequence entries ! 705: containing that index key are listed alphabetically. Each sequence ! 706: name is also followed by its data file division and primary accession ! 707: number. The following codes are used to designate the data file ! 708: divisions: ! 709: ! 710: 1. PRI - primates ! 711: 2. ROD - rodents ! 712: 3. MAM - other mammals ! 713: 4. VRT - other vertebrates ! 714: 5. INV - invertebrates ! 715: 6. PLN - plants, fungi, and algae ! 716: 7. ORG - organelles ! 717: 8. BCT - bacteria ! 718: 9. RNA - structural RNAs ! 719: 10. VRL - viruses ! 720: 11. PHG - bacteriophage ! 721: 12. SYN - synthetic sequences ! 722: 13. UNA - unannotated sequences ! 723: ! 724: The index key begins in column 1 of a record. An 11-character field ! 725: for the sequence entry name starts in position 14 of a record, ! 726: followed by a 3-character field for the data file division, starting ! 727: at position 25 and ending at position 27, and a 6-character field for ! 728: the primary accession number, starting at position 29 and ending at ! 729: position 34. All entries in the fields are left-justified. ! 730: ! 731: Beginning at positions 36 and 58, the three fields repeat, so three ! 732: sets of sequence information can appear in one record. If there are ! 733: more than three entry names, the next records are used; the index key ! 734: is not repeated. For the accession number and human gene symbol index ! 735: files, the entry names begin in the same record as the index key, ! 736: since the key is always less than 12 characters. In the other index ! 737: files, the entry names begin on the record following the index key ! 738: record. ! 739: ! 740: 3.3.1 Accession Number Index File ! 741: ! 742: Accession numbers consist of a single letter followed by five digits. ! 743: They provide an unchanging designation for the data with which they ! 744: are associated, and we encourage you to cite accession numbers ! 745: whenever you refer to data from the data bank. The primary accession ! 746: number is the first accession number of an entry. It is unique to that ! 747: entry. Citation of that number will enable other investigators to ! 748: locate the data no matter what entry name changes or other data bank ! 749: reorganizations may occur. The accession numbers, however, carry no ! 750: intrinsic information about the data. ! 751: ! 752: In addition to the primary accession number, some entries have ! 753: secondary accession numbers. Secondary accession numbers arise for a ! 754: number of reasons. For example, a single accession number may ! 755: initially be assigned to the sequence in an article. If it is later ! 756: discovered that the sequence must be entered into the data bank as ! 757: multiple entries, each entry would receive a new primary accession ! 758: number; the previous accession number would appear as the secondary ! 759: accession number in each entry. ! 760: ! 761: The following excerpt from the accession number index file illustrates ! 762: the format of the index: ! 763: ! 764: 1 10 20 30 40 50 60 70 79 ! 765: ! 766: ---------+---------+---------+---------+---------+---------+---------+--------- ! 767: ! 768: J00316 HUMTBB11P PRI J00316 ! 769: J00317 HUMTBB46P PRI J00317 ! 770: J00318 HUMUG1 PRI J00318 ! 771: J00319 HUMUG1PA PRI J00319 ! 772: J00320 HUMVIPMR1 PRI L00154 HUMVIPMR2 PRI L00155 HUMVIPMR3 PRI L00156 ! 773: HUMVIPMR4 PRI L00157 HUMVIPMR5 PRI L00158 ! 774: J00321 BABA1AT PRI J00321 ! 775: J00322 CHPRSA PRI J00322 ! 776: J00323 AGMRSASPC PRI J00323 ! 777: J00324 BABATIII PRI J00324 ! 778: ! 779: ---------+---------+---------+---------+---------+---------+---------+--------- ! 780: ! 781: 1 10 20 30 40 50 60 70 79 ! 782: ! 783: Example 4. Accession Number Index File ! 784: ! 785: If the same accession number is found in more than one entry (a result ! 786: of the infrequent occasions when a single entry is split into two or ! 787: more separate entries), then the additional entries and groups in ! 788: which the number appears are also given. ! 789: ! 790: 3.3.2 Keyword Phrase Index File ! 791: ! 792: Keyword phrases consist of names for gene products and other ! 793: characteristics of sequence entries. There are approximately 12,000 ! 794: keyword phrases. An excerpt from the keyword phrase index file is ! 795: shown below: ! 796: ! 797: 1 10 20 30 40 50 60 70 79 ! 798: ! 799: ---------+---------+---------+---------+---------+---------+---------+--------- ! 800: ! 801: DNA GYRASE ! 802: ECOGYRA BCT X06744 ECORECF BCT K02179 ECORECFA BCT X04341 ! 803: DNA HELICASE ! 804: ECOHELIV BCT J04726 ECOUVRD BCT X00738 ! 805: DNA INVERTASE ! 806: ECOPIN BCT K00676 ECOPINP BCT K03521 PMUGINMOM PHG V01463 ! 807: STAINVSA BCT M36694 ! 808: DNA LIGASE ! 809: ECOLIG BCT M24278 ECOLIGA BCT M30255 PT4G30 PHG X00039 ! 810: PT6LIG55 PHG M38465 PT7CG PHG J02518 YSCCDC9 PLN X03246 ! 811: YSPCDC17 PLN X05107 ! 812: DNA LIGASE I ! 813: HUMLIGAA PRI M36067 ! 814: DNA MATURATION ! 815: HS1CAS VRL M22962 ! 816: DNA METHYLASE ! 817: HEHMTS BCT J02677 ! 818: DNA METHYLATION ! 819: HEHMTS BCT J02677 HUMSPM1 PRI X06585 HUMSPM2 PRI X06586 ! 820: HUMSPM3 PRI X06587 HUMSPM4 PRI X06588 HUMSPM5 PRI X07490 ! 821: HUMSPM6 PRI X07491 HUMSPM7 PRI X07492 HUMSPM8 PRI X07493 ! 822: HUMSPM9 PRI X07494 ! 823: ! 824: ---------+---------+---------+---------+---------+---------+---------+--------- ! 825: ! 826: 1 10 20 30 40 50 60 70 79 ! 827: ! 828: Example 5. Keyword Phrase Index File ! 829: ! 830: ! 831: ! 832: 3.3.3 Author Name Index File ! 833: ! 834: The author name index file lists all of the author names that appear ! 835: in the citations. An excerpt from the author name index file is shown ! 836: below: ! 837: ! 838: ! 839: ! 840: 1 10 20 30 40 50 60 70 79 ! 841: ! 842: ---------+---------+---------+---------+---------+---------+---------+--------- ! 843: ! 844: JACKOWSKI,S. ! 845: ECOPANF BCT M30953 ! 846: JACKS,C.M. ! 847: MUSRP32A ROD M35397 MUSRPL32A ROD M23453 ! 848: JACKS,T. ! 849: MMTGXPPR VRL M16766 ! 850: JACKSON,A. ! 851: BOVMHBOLA MAM M21044 BOVMHBOLB MAM M21043 ! 852: JACKSON,A.O. ! 853: BSMRVPS SYN M28702 M23023 UNA M23023 MBSRNAG VRL M11511 ! 854: MBSRNAGND VRL M16577 MBSRNAGSA VRL M11509 MBSRNAGSB VRL M11510 ! 855: MBSRNAGT VRL M16576 SAPCAP VRL M17182 SYENCP VRL M17210 ! 856: SYERNA VRL M13950 SYESC6 VRL M35689 ! 857: ! 858: ---------+---------+---------+---------+---------+---------+---------+--------- ! 859: ! 860: 1 10 20 30 40 50 60 70 79 ! 861: ! 862: Example 6. Author Name Index File ! 863: ! 864: ! 865: ! 866: 3.3.4 Journal Citation Index File ! 867: ! 868: The journal citation index file lists all of the citations that appear ! 869: in the references. All citations are truncated to 80 characters. An ! 870: excerpt from the citation index file is shown below: ! 871: ! 872: ! 873: ! 874: 1 10 20 30 40 50 60 70 79 ! 875: ! 876: ---------+---------+---------+---------+---------+---------+---------+--------- ! 877: ! 878: (IN) THE CELL NUCLEUS, VOLUME VIII: 261-305; ACADEMIC PRESS, NEW YORK (1981) ! 879: RATUR5A RNA K00783 ! 880: (IN) THE IMMUNE SYSTEM: 132-138; S. KARGER, NEW YORK (1981). ! 881: HUMIGHVX PRI M35415 ! 882: (IN) THE LENS: TRANSPARANCY AND CATARACT: 171-179; EURAGE, RIJSWIJK (1986) ! 883: RANCRYG2A VRT K02264 RANCRYG4A VRT K02266 RANCRYG5A VRT M22529 ! 884: RANCRYG6A VRT M22530 RANCRYR VRT X00659 ! 885: (IN) UCLA SYMP. MOL. CELL. BIOL. NEW SER., VOL. 77: 339-352; ALAN R. LISS, INC. ! 886: BOVTRNB2A MAM M36431 HUMTRNB PRI M36429 HUMTRNB1 PRI M36430 ! 887: (IN) UCLA SYMPOSIA: 575-584; ALAN R. LISS, INC., NEW YORK (1987) ! 888: PFAHGPRT INV M54896 ! 889: (IN) VIRUS RESEARCH. PROCEEDINGS OF 1973 ICN-UCLA SYMPOSIUM: 533-544; ACADEMIC ! 890: LAMCG PHG J02459 ! 891: ACTA BIOCHIM. POL. 24, 301-318 (1977) ! 892: LUPTRFJ RNA K00345 LUPTRFN RNA K00346 ! 893: ! 894: ---------+---------+---------+---------+---------+---------+---------+--------- ! 895: ! 896: 1 10 20 30 40 50 60 70 79 ! 897: ! 898: Example 7. Journal Citation Index File ! 899: ! 900: 3.3.5 Cross-Reference To Gene Symbol Libraries ! 901: ! 902: The gene symbol file contains the gene symbols used in the Genome Data ! 903: Base and other gene symbols, such as those for the E. coli genes. The ! 904: gene symbols are found in the feature table and have the form: ! 905: /gene="gene symbol"; an example is found in section 3.5.11.5. An ! 906: example of the format of the gene symbol index file follows: ! 907: ! 908: 1 10 20 30 40 50 60 70 79 ! 909: ! 910: ---------+---------+---------+---------+---------+---------+---------+--------- ! 911: ! 912: INFC ECOHIMA BCT K02844 ECOTHRINF BCT V00291 ! 913: INHA HUMINHA PRI M13981 HUMINHAA PRI M13144 HUMINHAG1 PRI X04445 ! 914: HUMINHAG2 PRI X04446 HUMINHAG2 PRI X04446 ! 915: INHBA HUMINHBA PRI M13436 ! 916: INHBB HUMINHBB PRI M13437 HUMINHBB1 PRI M31668 HUMINHBB2 PRI M31669 ! 917: HUMINHBB2 PRI M31669 HUMINHIB PRI M31682 ! 918: INS HUMINS01 PRI J00265 HUMINS01 PRI J00265 HUMINSPR PRI M10039 ! 919: HUMINV2 PRI M13903 ! 920: INSR HUMINSR PRI M10051 HUMINSR01 PRI M23100 HUMINSR02 PRI M32823 ! 921: HUMINSR03 PRI M32824 HUMINSR04 PRI M32825 HUMINSR05 PRI M32826 ! 922: HUMINSR06 PRI M32827 HUMINSR07 PRI M32828 HUMINSR08 PRI M32829 ! 923: HUMINSR09 PRI M32830 HUMINSR10 PRI M32831 HUMINSR11 PRI M32832 ! 924: HUMINSR12 PRI M32833 HUMINSR13 PRI M32834 HUMINSR14 PRI M32835 ! 925: HUMINSR15 PRI M32836 HUMINSR16 PRI M32837 HUMINSR17 PRI M32838 ! 926: HUMINSR18 PRI M32839 HUMINSR19 PRI M32840 HUMINSR20 PRI M32841 ! 927: HUMINSR21 PRI M32842 HUMINSR22 PRI M32972 HUMINSRA PRI X02160 ! 928: HUMINSRA01 PRI M27195 HUMINSRA02 PRI M27197 HUMINSRB PRI J03466 ! 929: HUMINSRC PRI M29929 HUMINSRD PRI M29930 HUMINSRMUT PRI M27196 ! 930: HUMIRSRE PRI J05043 ! 931: INT1 HUMINT1G PRI X03072 ! 932: INT1L1 HUMIRP PRI X07876 ! 933: IRGA VCHIRGA BCT M37773 VCHIRGA BCT M37773 VCHIRGA BCT M37773 ! 934: VCHIRGA BCT M37773 VCHIRGA BCT M37773 VCHIRGB BCT M55988 ! 935: VCHIRGB BCT M55988 ! 936: ! 937: ---------+---------+---------+---------+---------+---------+---------+--------- ! 938: ! 939: 1 10 20 30 40 50 60 70 79 ! 940: ! 941: Example 8. Gene Symbol Index File ! 942: ! 943: ! 944: 3.4 GenBank Data Submission Form and Error/Suggestion Report Form ! 945: ! 946: The distribution tape includes a data submission form in the file ! 947: GBDAT.FRM. Due to the large volume of new sequence data, we encourage ! 948: authors to complete this form and return it to the address listed on ! 949: the form. This will enable data to be entered more quickly into the ! 950: data bank. ! 951: ! 952: You can complete the form with any text editor. You can send the ! 953: completed form to GenBank on tape or floppy diskette, or ! 954: electronically via INTERNET or BITNET (the electronic mail address is: ! 955: gb-sub%[email protected]). We can use information saved on any computer ! 956: medium from any computer system. You can also print the form, fill it ! 957: in by hand, and send it to the mailing address given at the beginning ! 958: of the form. ! 959: ! 960: The second form in this file is the GenBank Error/Suggestion Report ! 961: Form. It is separated from the Data Submission Form by a form-feed ! 962: character (<CTRL>L, ASCII octal value 014, ASCII decimal value 12). We ! 963: encourage all GenBank users to report any errors to the data bank ! 964: staff using this form. Like the GenBank Data Submission Form, it may ! 965: be printed and filled in by hand and sent by mail to the address given ! 966: at the beginning of the form. It may also be filled out using a text ! 967: editor and sent to GenBank by electronic mail at the address given at ! 968: the top of the form. ! 969: ! 970: If you have an IBM PC or compatible computer, or a Macintosh personal ! 971: computer, we request that you use the Authorin program for submitting ! 972: sequences to the data bank. See section 5.5 for information about ! 973: obtaining the Authorin program at no charge. ! 974: ! 975: 3.5 Sequence Entry Files ! 976: ! 977: The distribution tape contains thirteen sequence entry data files, one ! 978: for each division of GenBank. Each file contains the entries for one ! 979: group of organisms. ! 980: ! 981: 3.5.1 File Organization ! 982: ! 983: Each of these files has the same format and consists of two parts: ! 984: header information (described in section 3.1) and sequence entries for ! 985: that division (described in the following sections). ! 986: ! 987: 3.5.2 Entry Organization ! 988: ! 989: In the second portion of a sequence entry file (containing the ! 990: sequence entries for that division), each record (line) consists of ! 991: two parts. The first part is found in positions 1 to 10 and may ! 992: contain: ! 993: ! 994: 1. A keyword, beginning in column 1 of the record (e.g., REFERENCE is ! 995: a keyword). ! 996: ! 997: 2. A subkeyword beginning in column 3, with columns 1 and 2 blank ! 998: (e.g., AUTHORS is a subkeyword of REFERENCE). ! 999: ! 1000: 3. Blank characters, indicating that this record is a continuation of ! 1001: the information under the keyword or subkeyword above it. ! 1002: ! 1003: 4. A code, beginning in column 5, indicating the nature of an entry ! 1004: (feature key) in the FEATURES table; these codes are described in ! 1005: Section 3.5.11.1 below. ! 1006: ! 1007: 5. A number, ending in column 9 of the record. This number occurs in ! 1008: the portion of the entry describing the actual nucleotide sequence and ! 1009: designates the numbering of sequence positions. ! 1010: ! 1011: 6. Two slashes (//) in positions 1 and 2, marking the end of an entry. ! 1012: ! 1013: The second part of each sequence entry record contains the information ! 1014: appropriate to its keyword, in positions 13 to 80 for keywords and ! 1015: positions 11 to 80 for the sequence. ! 1016: ! 1017: The following is a brief description of each entry field. Detailed ! 1018: information about each field may be found in Sections 3.5.4 to 3.5.13. ! 1019: ! 1020: LOCUS - A short unique name for the entry, chosen to suggest the ! 1021: sequence's definition. Mandatory keyword/exactly one record. ! 1022: ! 1023: DEFINITION - A concise description of the sequence. Mandatory ! 1024: keyword/one or more records. ! 1025: ! 1026: ACCESSION - The primary accession number is a unique, unchanging ! 1027: code assigned to each entry. (Please use this code when citing ! 1028: information from GenBank.) Mandatory keyword/one or more records. ! 1029: ! 1030: KEYWORDS - Short phrases describing gene products and other ! 1031: information about an entry. Mandatory keyword in all annotated ! 1032: entries/one or more records. ! 1033: ! 1034: SEGMENT - Information on the order in which this entry appears in a ! 1035: series of discontinuous sequences from the same molecule. Optional ! 1036: keyword (only in segmented entries)/exactly one record. ! 1037: ! 1038: SOURCE - Common name of the organism or the name most frequently used ! 1039: in the literature. Mandatory keyword in all annotated entries/one or ! 1040: more records/includes one subkeyword. ! 1041: ! 1042: ORGANISM - Formal scientific name of the organism (first line) ! 1043: and taxonomic classification levels (second and subsequent lines). ! 1044: Mandatory subkeyword in all annotated entries/two or more records. ! 1045: ! 1046: REFERENCE - Citations for all articles containing data reported ! 1047: in this entry. Includes four subkeywords and may repeat. Mandatory ! 1048: keyword/one or more records. ! 1049: ! 1050: AUTHORS - Lists the authors of the citation. Mandatory ! 1051: subkeyword/one or more records. ! 1052: ! 1053: TITLE - Full title of citation. Optional subkeyword (present ! 1054: in all but unpublished citations)/one or more records. ! 1055: ! 1056: JOURNAL - Lists the journal name, volume, year, and page ! 1057: numbers of the citation. Mandatory subkeyword/one or more records. ! 1058: ! 1059: STANDARD - Lists information about the degree to which the ! 1060: entry has been annotated and the level of review to which it has been ! 1061: subjected. Mandatory subkeyword/exactly one record. ! 1062: ! 1063: COMMENT - Cross-references to other sequence entries, comparisons to ! 1064: other collections, notes of changes in LOCUS names, and other remarks. ! 1065: Optional keyword/one or more records/may include blank records. ! 1066: ! 1067: FEATURES - Table containing information on portions of the ! 1068: sequence that code for proteins and RNA molecules and information on ! 1069: experimentally determined sites of biological significance. Optional ! 1070: keyword/one or more records. ! 1071: ! 1072: BASE COUNT - Summary of the number of occurrences of each base ! 1073: code in the sequence. Mandatory keyword/exactly one record. ! 1074: ! 1075: ORIGIN - Specification of how the first base of the reported sequence ! 1076: is operationally located within the genome. Where possible, this ! 1077: includes its location within a larger genetic map. Mandatory ! 1078: keyword/exactly one record. ! 1079: ! 1080: - The ORIGIN line is followed by sequence data (multiple ! 1081: records). ! 1082: ! 1083: // - Entry termination symbol. Mandatory at the end of an ! 1084: entry/exactly one record. ! 1085: ! 1086: ! 1087: 3.5.3 Sample Sequence Data File ! 1088: ! 1089: An example of a complete sequence entry file follows. (This example ! 1090: has only two entries.) Note that in this example, as throughout the ! 1091: data bank, numbers in square brackets indicate items in the REFERENCE ! 1092: list. For example, in ACARR58S, [1] refers to the paper by Mackay, et ! 1093: al. ! 1094: ! 1095: 1 10 20 30 40 50 60 70 79 ! 1096: ! 1097: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1098: ! 1099: GBSMP.SEQ Genetic Sequence Data Bank ! 1100: 15 December 1990 ! 1101: ! 1102: GenBank(R) Release 66.0 ! 1103: ! 1104: Structural Rna Sequences ! 1105: ! 1106: 2 loci, 280 bases, from 2 reported sequences ! 1107: ! 1108: LOCUS AAURRA 118 bp ss-rRNA RNA 16-JUN-1986 ! 1109: DEFINITION A.auricula-judae (mushroom) 5S ribosomal RNA. ! 1110: ACCESSION K03160 ! 1111: KEYWORDS 5S ribosomal RNA; ribosomal RNA. ! 1112: SOURCE A.auricula-judae (mushroom) ribosomal RNA. ! 1113: ORGANISM Auricularia auricula-judae ! 1114: Eukaryota; Plantae; Thallobionta; Basidiomycotina; ! 1115: Phragmobasidiomycetes; Heterobasidiomycetidae; Eutremellales; ! 1116: Auriculariaceae; Auricularia; auricula-judae. ! 1117: REFERENCE 1 (bases 1 to 118) ! 1118: AUTHORS Huysmans,E., Dams,E., Vandenberghe,A. and De Wachter,R. ! 1119: TITLE The nucleotide sequences of the 5S rRNAs of four mushrooms and ! 1120: their use in studying the phylogenetic position of basidiomycetes ! 1121: among the eukaryotes ! 1122: JOURNAL Nucleic Acids Res. 11, 2871-2880 (1983) ! 1123: STANDARD full staff_review ! 1124: FEATURES Location/Qualifiers ! 1125: rRNA 1..118 ! 1126: /note="5S ribosomal RNA" ! 1127: BASE COUNT 27 a 34 c 34 g 23 t ! 1128: ORIGIN 5' end of mature rRNA. ! 1129: 1 atccacggcc ataggactct gaaagcactg catcccgtcc gatctgcaaa gttaaccaga ! 1130: 61 gtaccgccca gttagtacca cggtggggga ccacgcggga atcctgggtg ctgtggtt ! 1131: // ! 1132: LOCUS ACARR58S 162 bp ss-rRNA RNA 15-MAR-1989 ! 1133: DEFINITION A.castellanii (amoeba) 5.8S ribosomal RNA. ! 1134: ACCESSION K00471 ! 1135: KEYWORDS 5.8S ribosomal RNA; ribosomal RNA. ! 1136: SOURCE A.castellani (amoeba; strain ATCC 30010) rRNA. ! 1137: ORGANISM Acanthamoeba castellanii ! 1138: Eukaryota; Animalia; Protozoa; Sarcomastigophora; Sarcodina; ! 1139: Rhizopoda; Lobosa; Gymnamoeba; Amoebida; Acanthopodina; ! 1140: Acanthamoebidae; Acanthamoeba; castellanii. ! 1141: REFERENCE 1 (bases 1 to 162) ! 1142: AUTHORS Mackay,R.M. and Doolittle,W.F. ! 1143: TITLE Nucleotide sequences of AcanthamoebA.castellanii 5S and 5.8S ! 1144: ribosomal ribonucleic acids: Phylogenetic and comparative ! 1145: structural analyses ! 1146: JOURNAL Nucleic Acids Res. 9, 3321-3334 (1981) ! 1147: STANDARD simple staff_review ! 1148: COMMENT [1] also sequenced A.castellanii 5S rRNA <K03160>. ! 1149: FEATURES Location/Qualifiers ! 1150: rRNA 1..162 ! 1151: /note="5.8S rRNA" ! 1152: BASE COUNT 40 a 39 c 44 g 39 t ! 1153: ORIGIN 5' end of mature rRNA. ! 1154: 1 aactcctaac aacggatatc ttggttctcg cgaggatgaa gaacgcagcg aaatgcgata ! 1155: 61 cgtagtgtga atcgcaggga tcagtgaatc atcgaatctt tgaacgcaag ttgcgctctc ! 1156: 121 gtggtttaac cccccgggag cacgttcgct tgagtgccgc tt ! 1157: // ! 1158: ! 1159: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1160: ! 1161: 1 10 20 30 40 50 60 70 79 ! 1162: ! 1163: Example 9. Sample Sequence Data File ! 1164: ! 1165: ! 1166: 3.5.4 LOCUS Format ! 1167: ! 1168: The pieces of information contained in the LOCUS record are always ! 1169: found in fixed positions. The locus name (or entry name), which is ! 1170: always ten characters or less, begins in position 13. The locus name ! 1171: is designed to help group entries with similar sequences: the first ! 1172: three characters usually designate the organism; the fourth and fifth ! 1173: characters can be used to show other group designations, such as gene ! 1174: product; for segmented entries the last character is one of a series ! 1175: of sequential integers. ! 1176: ! 1177: The number of bases or base pairs in the sequence ends in position 29. ! 1178: The letters `bp' are in positions 31 to 32. Positions 34 to 36 give ! 1179: the number of strands of the sequence. Positions 37 to 40 give the ! 1180: topology of molecule sequenced. If the sequence is of a special type, ! 1181: a notation (such as `circular') is included in positions 43 to 52. ! 1182: ! 1183: GenBank sequence entries are divided among thirteen taxonomic ! 1184: divisions. Each entry's division is identified by a three-letter code ! 1185: in positions 53 to 55. See Section 3.3 for the division codes. ! 1186: ! 1187: Positions 63 to 73 of the record contain the date the entry was ! 1188: entered or underwent any substantial revisions, such as the addition ! 1189: of newly published data, in the form dd-MMM-yyyy. ! 1190: ! 1191: The detailed format for the LOCUS record is as follows: ! 1192: ! 1193: Positions Contents ! 1194: ! 1195: 1-12 LOCUS ! 1196: 13-22 Locus name ! 1197: 23-29 Length of sequence, right-justified ! 1198: 31-32 bp ! 1199: 34-36 Blank, ss- (single-stranded), ds- (double-stranded), or ! 1200: ms- (mixed-stranded) ! 1201: 37-40 Blank, DNA, RNA, tRNA (transfer RNA), rRNA (ribosomal RNA), ! 1202: mRNA (messenger RNA), or uRNA (small nuclear RNA) ! 1203: 43-52 Blank (implies linear), circular, or tandem ! 1204: 53-55 The division code (see Section 3.3) ! 1205: 63-73 Date, in the form dd-MMM-yyyy (e.g., 15-DEC-1990) ! 1206: ! 1207: 3.5.5 DEFINITION Format ! 1208: ! 1209: The DEFINITION record gives a brief description of the sequence, ! 1210: proceeding from general to specific. It starts with the common name of ! 1211: the source organism, then gives the criteria by which this sequence is ! 1212: distinguished from the remainder of the source genome, such as the ! 1213: gene name and what it codes for, or the protein name and mRNA, or some ! 1214: description of the sequence's function (if the sequence is ! 1215: non-coding). If the sequence has a coding region, the description may ! 1216: be followed by a completeness qualifier, such as cds (complete coding ! 1217: sequence). The length is limited to three lines and the last line must ! 1218: end with a period. ! 1219: ! 1220: 3.5.6 ACCESSION Format ! 1221: ! 1222: This field contains a series of six-character identifiers (accession ! 1223: numbers: first character a letter, the remainder digits). The primary ! 1224: (first) accession number occupies positions 13 to 18; subsequent ! 1225: accession numbers occupy positions 20 to 25, 27 to 32, 34 to 39, 41 to ! 1226: 46, 48 to 53, 55 to 60, 62 to 67, and 69 to 74. No punctuation occurs ! 1227: between accession numbers or after the final accession number; ! 1228: accession numbers are separated only by one space. ! 1229: ! 1230: 3.5.7 KEYWORDS Format ! 1231: ! 1232: The KEYWORDS field does not appear in unannotated entries, but is ! 1233: required in all annotated entries. Keywords are separated by ! 1234: semicolons; a keyword may be a single word or a phrase consisting of ! 1235: several words. Each line in the keywords field ends in a semicolon; ! 1236: the last line ends with a period. If no keywords are included in the ! 1237: entry, the KEYWORDS record contains only a period. ! 1238: ! 1239: 3.5.8 SEGMENT Format ! 1240: ! 1241: The SEGMENT keyword is used when two (or more) entries of known ! 1242: relative orientation are separated by a short (<10 kb) stretch of DNA. ! 1243: It is limited to one line of the form `n of m', where `n' is the ! 1244: segment number of the current entry and `m' is the total number of ! 1245: segments. ! 1246: ! 1247: 3.5.9 SOURCE Format ! 1248: ! 1249: The SOURCE field consists of two parts. The first part is found after ! 1250: the SOURCE keyword and contains free-format information including an ! 1251: abbreviated form of the organism name followed by a molecule type; ! 1252: multiple lines are allowed, but the last line must end with a period. ! 1253: The second part consists of information found after the ORGANISM ! 1254: subkeyword. The formal scientific name for the source organism (genus ! 1255: and species, where appropriate) is found on the same line as ORGANISM. ! 1256: The records following the ORGANISM line list the taxonomic ! 1257: classification levels, separated by semicolons and ending with a ! 1258: period. ! 1259: ! 1260: 3.5.10 REFERENCE Format ! 1261: ! 1262: The REFERENCE field consists of five parts: the keyword REFERENCE, and ! 1263: the subkeywords AUTHORS, TITLE (optional), JOURNAL and STANDARD. ! 1264: ! 1265: The REFERENCE line contains the number of the particular reference and ! 1266: (in parentheses) the range of bases in the sequence entry reported in ! 1267: this citation. Additional prose notes may also be found within the ! 1268: parentheses. The numbering of the references does not reflect ! 1269: publication dates or priorities. ! 1270: ! 1271: The AUTHORS line lists the authors in the order in which they appear ! 1272: in the cited article. Last names are separated from initials by a ! 1273: comma (no space); there is no comma before the final `and'. The list ! 1274: of authors ends with a period. ! 1275: ! 1276: The TITLE line is an optional field, although it appears in the ! 1277: majority of entries. It does not appear in unpublished sequence data ! 1278: entries that have been deposited directly into the GenBank data bank, ! 1279: the EMBL Nucleotide Sequence Data Library, or the DNA Data Bank of ! 1280: Japan. The TITLE field does not end with a period. ! 1281: ! 1282: The JOURNAL line gives the appropriate literature citation for the ! 1283: sequence in the entry. The word `Unpublished' will appear after the ! 1284: JOURNAL subkeyword if the data did not appear in the scientific ! 1285: literature, but was directly deposited into the data bank. For ! 1286: published sequences the JOURNAL line gives the Thesis, Journal, or ! 1287: Book citation, including the year of publication, the specific ! 1288: citation, or In press. ! 1289: ! 1290: The STANDARD line contains information about: ! 1291: ! 1292: The degree to which the entry has been annotated: ! 1293: ! 1294: `unannotated' for unannotated entries which include citation and ! 1295: sequence only. ! 1296: ! 1297: `simple' for unannotated entries which include the organism name and ! 1298: protein coding regions as well as the citation and sequence. ! 1299: ! 1300: `full' for fully annotated entries which include all the data items ! 1301: that were described by the author. ! 1302: ! 1303: The level of modification and review: ! 1304: ! 1305: `automatic' for data subjected only to automated (i.e., software) ! 1306: checks. ! 1307: ! 1308: `staff_entry' for data that passed both automated and annotator ! 1309: checks. ! 1310: ! 1311: `staff_review' for data that passed previous review levels as well as ! 1312: a review by senior annotators and/or outside experts. ! 1313: ! 1314: The format for the STANDARD line is: annotation degree <SPACE> review level ! 1315: ! 1316: ! 1317: 3.5.11 FEATURES Format ! 1318: ! 1319: This release uses the new feature table format. This format has been ! 1320: designed jointly by GenBank, the EMBL Nucleotide Sequence Data ! 1321: Library, and the DNA Data Bank of Japan, and will be common to all ! 1322: three data banks. ! 1323: ! 1324: The feature table contains information about genes and gene products, ! 1325: as well as regions of biological significance reported in the ! 1326: sequence. The feature table contains information on regions of the ! 1327: sequence that code for proteins and RNA molecules. It also enumerates ! 1328: differences between different reports of the same sequence, and ! 1329: provides cross-references to other data collections, as described in ! 1330: more detail below. ! 1331: ! 1332: The first line of the feature table is a header that includes the ! 1333: keyword `FEATURES' and the column header `Location/Qualifier.' Each ! 1334: feature consists of a descriptor line containing a feature key and a ! 1335: location (see sections below for details). If the location does not ! 1336: fit on this line, a continuation line may follow. If further ! 1337: information about the feature is required, one or more lines ! 1338: containing feature qualifiers may follow the descriptor line. ! 1339: ! 1340: The feature key begins in column 6 and may be no more than 15 ! 1341: characters in length. The location begins in column 22. Feature ! 1342: qualifiers begin on subsequent lines at column 22. Location, ! 1343: qualifier, and continuation lines may extend from column 22 to 80. ! 1344: ! 1345: Feature tables are optional. However, a feature table must include one ! 1346: header line and at least one feature descriptor line. ! 1347: ! 1348: The sections below provide a brief introduction to the new feature ! 1349: table format. For a thorough description of the new feature table ! 1350: format, see the document `The DDBJ/EMBL/GenBank Feature Table: ! 1351: Definition.' If you would like a copy of this publication, contact ! 1352: GenBank at the address shown on the front page of these Release Notes. ! 1353: ! 1354: 3.5.11.1 Feature Key Names ! 1355: ! 1356: The first column of the feature descriptor line contains the feature ! 1357: key. It starts at column 6 and can continue to column 20. The list of ! 1358: valid feature keys is shown below. ! 1359: ! 1360: allele Related strain contains alternative gene form ! 1361: attenuator Sequence related to transcription termination ! 1362: CAAT_signal `CAAT box' in eukaryotic promoters ! 1363: CDS Sequence coding for amino acids in protein (includes stop ! 1364: codon) ! 1365: cellular Region of cellular DNA ! 1366: conflict Independent determinations differ ! 1367: D-loop Displacement loop ! 1368: enhancer Cis-acting enhancer of promoter function ! 1369: exon Region that codes for part of spliced mRNA ! 1370: GC_signal `GC box' in eukaryotic promoters ! 1371: iDNA Intervening DNA eliminated by recombination ! 1372: insertion_seq Insertion sequence (IS), a small transposon ! 1373: intron Transcribed region excised by mRNA splicing ! 1374: LTR Long terminal repeat ! 1375: mat_peptide Mature peptide coding region (does not include stop codon) ! 1376: misc_binding Miscellaneous binding site ! 1377: misc_difference Miscellaneous difference feature ! 1378: misc_feature Region of biological significance that cannot be described by ! 1379: any other feature ! 1380: misc_recomb Miscellaneous recombination feature ! 1381: misc_RNA Miscellaneous transcript feature not defined by other RNA keys ! 1382: misc_signal Miscellaneous signal ! 1383: misc_structure Miscellaneous DNA or RNA structure ! 1384: modified_base The indicated base is a modified nucleotide ! 1385: mRNA Messenger RNA ! 1386: mutation A mutation alters the sequence here ! 1387: old_sequence Presented sequence revises a previous version ! 1388: polyA_signal Signal for cleavage & polyadenylation ! 1389: polyA_site Site at which polyadenine is added to mRNA ! 1390: precursor_RNA Any RNA species that is not yet the mature RNA product ! 1391: prim_transcript Primary (unprocessed) transcript ! 1392: primer_bind Non-covalent primer binding site ! 1393: promoter A region involved in transcription initiation ! 1394: protein_bind Non-covalent protein binding site on DNA or RNA ! 1395: provirus Proviral sequence ! 1396: RBS Ribosome binding site ! 1397: rep_origin Replication origin for duplex DNA ! 1398: repeat_region Sequence containing repeated subsequences ! 1399: repeat_unit One repeated unit of a repeat_region ! 1400: rRNA Ribosomal RNA ! 1401: satellite Satellite repeated sequence ! 1402: scRNA Small cytoplasmic RNA ! 1403: sig_peptide Signal peptide coding region ! 1404: snRNA Small nuclear RNA ! 1405: stem_loop Hair-pin loop structure in DNA or RNA ! 1406: TATA_signal `TATA box' in eukaryotic promoters ! 1407: terminator Sequence causing transcription termination ! 1408: transit_peptide Transit peptide coding region ! 1409: transposon Transposable element (TN) ! 1410: tRNA Transfer RNA ! 1411: unsure Authors are unsure about the sequence in this region ! 1412: variation A related population contains stable mutation ! 1413: virion Virion (encapsidated) viral sequence ! 1414: - (hyphen) Placeholder ! 1415: -10_signal `Pribnow box' in prokaryotic promoters ! 1416: -35_signal `-35 box' in prokaryotic promoters ! 1417: 3'clip 3'-most region of a precursor transcript removed in processing ! 1418: 3'UTR 3' untranslated region (trailer) ! 1419: 5'clip 5'-most region of a precursor transcript removed in processing ! 1420: 5'UTR 5' untranslated region (leader) ! 1421: ! 1422: 3.5.11.2 Feature Location ! 1423: ! 1424: The second column of the feature descriptor line designates the ! 1425: location of the feature in the sequence. The location descriptor ! 1426: begins at position 22. Several conventions are used to indicate ! 1427: sequence location. ! 1428: ! 1429: Base numbers in location descriptors refer to numbering in the entry, ! 1430: which is not necessarily the same as the numbering scheme used in the ! 1431: published report. The first base in the presented sequence is numbered ! 1432: base 1. Sequences are presented in the 5' to 3' direction. ! 1433: ! 1434: Location descriptors can be one of the following: ! 1435: ! 1436: 1. A single base; ! 1437: 2. A contiguous span of bases; ! 1438: 3. A site between two bases; ! 1439: 4. A single base chosen from a range of bases; ! 1440: 5. A single base chosen from among two or more specified bases; ! 1441: 6. A joining of sequence spans; ! 1442: 7. A reference to an entry other than the one to which the feature ! 1443: belongs (i.e., a remote entry), followed by a location descriptor ! 1444: referring to the remote sequence; ! 1445: 8. A literal sequence (a string of bases enclosed in quotation marks). ! 1446: ! 1447: A site between two residues, such as an endonuclease cleavage site, is ! 1448: indicated by listing the two bases separated by a carat (e.g., 23^24). ! 1449: ! 1450: A single residue chosen from a range of residues is indicated by the ! 1451: number of the first and last bases in the range separated by a single ! 1452: period (e.g., 23.79). The symbols < and > indicate that the end point ! 1453: of the range is beyond the specified base number. ! 1454: ! 1455: A contiguous span of bases is indicated by the number of the first and ! 1456: last bases in the range separated by two periods (e.g., 23..79). The ! 1457: symbols < and > indicate that the end point of the range is beyond the ! 1458: specified base number. Starting and ending positions can be indicated ! 1459: by base number or by one of the operators described below. ! 1460: ! 1461: Operators are prefixes that specify what must be done to the indicated ! 1462: sequence to locate the feature. The following are the operators ! 1463: available, along with their most common format and a description. ! 1464: ! 1465: complement (location): The feature is complementary to the location ! 1466: indicated. Complementary strands are read 5' to 3'. ! 1467: ! 1468: join (location, location, .. location): The indicated elements should ! 1469: be placed end to end to form one contiguous sequence. ! 1470: ! 1471: order (location, location, .. location): The elements are found in the ! 1472: specified order in the 5' to 3' direction, but nothing is implied ! 1473: about the rationality of joining them. ! 1474: ! 1475: group (location, location, .. location): The elements are related and ! 1476: should be grouped together, but no order is implied. ! 1477: ! 1478: one-of (location, location, .. location): The element can be any one, ! 1479: but only one, of the items listed. ! 1480: ! 1481: replace (location, location): The first location indicated should be ! 1482: replaced by the sequence from the second location; used for ! 1483: insertions, deletions, and variants. ! 1484: ! 1485: 3.5.11.3 Feature Qualifiers ! 1486: ! 1487: Qualifiers provide additional information about features. They take ! 1488: the form of a slash (/) followed by a qualifier name and, if ! 1489: applicable, an equal sign (=) and a qualifier value. Feature ! 1490: qualifiers begin at column 22. ! 1491: ! 1492: Qualifiers convey many types of information. Their values can, ! 1493: therefore, take several forms: ! 1494: ! 1495: 1. Free text; ! 1496: 2. Controlled vocabulary or enumerated values; ! 1497: 3. Citations or reference numbers; ! 1498: 4. Sequences; ! 1499: 5. Feature labels. ! 1500: ! 1501: Text qualifier values must be enclosed in double quotation marks. The ! 1502: text can consist of any printable characters (ASCII values 32-126 ! 1503: decimal). If the text string includes double quotation marks, each set ! 1504: must be `escaped' by placing a double quotation mark in front of it ! 1505: (e.g., /note="This is an example of ""escaped"" quotation marks"). ! 1506: ! 1507: Some qualifiers require values selected from a limited set of choices. ! 1508: For example, the `/direction' qualifier has only three values `left,' ! 1509: `right,' or `both.' These are called controlled vocabulary qualifier ! 1510: values. Controlled qualifier values are not case sensitive; they can ! 1511: be entered in any combination of upper- and lowercase without changing ! 1512: their meaning. ! 1513: ! 1514: Citation or published reference numbers for the entry should be ! 1515: enclosed in square brackets ([]) to distinguish them from other ! 1516: numbers. Multiple citations are separated by commas (e.g., ! 1517: [1],[2],[3]). ! 1518: ! 1519: A literal sequence of bases (e.g., "atgcatt") should be enclosed in ! 1520: quotation marks. Literal sequences are distinguished from free text by ! 1521: context. Qualifiers that take free text as their values do not take ! 1522: literal sequences, and vice versa. ! 1523: ! 1524: The `/label=' qualifier takes a feature label as its qualifier. ! 1525: Although feature labels are optional, they allow unambiguous ! 1526: references to the feature. The feature label identifies a feature ! 1527: within an entry; when combined with the accession number and the name ! 1528: of the data bank from which it came, it is a unique tag for that ! 1529: feature. Feature labels must be unique within an entry, but can be the ! 1530: same as a feature label in another entry. Feature labels are not case ! 1531: sensitive; they can be entered in any combination of upper-and ! 1532: lowercase without changing their meaning. ! 1533: ! 1534: The following is a list of valid feature qualifiers. ! 1535: ! 1536: /anticodon Location of the anticodon of tRNA and the amino acid ! 1537: for which it codes ! 1538: /bound_moiety Moiety bound ! 1539: /citation Reference to a citation providing the claim of or ! 1540: evidence for a feature ! 1541: /codon Specifies a codon that is different from any found in the ! 1542: reference genetic code ! 1543: /codon_start Indicates the reading frame of a protein coding region ! 1544: /cons_splice Identifies intron splice sites that do not conform to ! 1545: the 5'-GT... AG-3' splice site consensus ! 1546: /direction Direction of DNA replication ! 1547: /EC_number Enzyme Commission number for the enzyme product of the ! 1548: sequence ! 1549: /evidence Value indicating the nature of supporting evidence ! 1550: /frequency Frequency of the occurrence of a feature ! 1551: /function Function attributed to a sequence ! 1552: /gene Symbol of the gene corresponding to a sequence region ! 1553: /label A label used to permanently identify a feature ! 1554: /mod_base Abbreviation for a modified nucleotide base ! 1555: /note Any comment or additional information ! 1556: /number A number indicating the order of genetic elements (e.g., exons ! 1557: or introns) in the 5' to 3' direction ! 1558: /organism Name of organism if different from that contained in ! 1559: the entry's ORGANISM field ! 1560: /partial Differentiates between complete regions and partial ones ! 1561: /phenotype Phenotype conferred by the feature ! 1562: /product Name of a product encoded by the sequence ! 1563: /pseudo Indicates that this feature is a non-functional version of the ! 1564: element named by the feature key ! 1565: /rpt_family Type of repeated sequence; `Alu' or `Kpn,' for example ! 1566: /rpt_type Organization of repeated sequence ! 1567: /rpt_unit Identity of repeat unit that constitutes a ! 1568: repeat_region ! 1569: /standard_name Accepted standard name for this feature ! 1570: /transl_except Translational exception: single codon, the translation ! 1571: of which does not conform to the reference genetic code ! 1572: /type Name of a strain if different from that in the SOURCE field ! 1573: /usedin Indicates that feature is used in a compound feature in ! 1574: another entry ! 1575: ! 1576: 3.5.11.4 Cross-Reference Information ! 1577: ! 1578: One type of information in the feature table lists cross-references to ! 1579: the annual compilation of transfer RNA sequences in Nucleic Acids ! 1580: Research, which has kindly been sent to us on tape by Dr. Sprinzl. ! 1581: Each tRNA entry of the feature table contains a /note= qualifier that ! 1582: includes a reference such as `(NAR: 1234)' to identify code 1234 in ! 1583: the NAR compilation. When such a cross-reference appears in an entry ! 1584: that contains a gene coding for a transfer RNA molecule, it refers to ! 1585: the code in the tRNA gene compilation. Similar cross-references in ! 1586: entries containing mature transfer RNA sequences refer to the ! 1587: companion compilation of tRNA sequences published by D.H. Gauss and M. ! 1588: Sprinzl in Nucleic Acids Research. See section 3.5.11.6 for an ! 1589: example. ! 1590: ! 1591: The feature tables of human entries contain cross-references to the ! 1592: Genome Data Base (GDB) in Baltimore, MD. GDB includes information on ! 1593: mapped genes, probes, and restriction fragment length polymorphisms. ! 1594: Each entry in that data bank contains the official symbol for the gene ! 1595: or locus. GDB assigns each gene a unique identifier that remains ! 1596: associated with that gene, regardless of changes in gene names. In ! 1597: entries that contain sequences for mapped genes a /note= qualifier ! 1598: includes this identifier placed within single quotes following the ! 1599: term `/hgml_locus_uid='. The /note qualifier also includes the map ! 1600: location in single quotes following the term `/map'. The gene symbol ! 1601: formerly designated `/nomgen=' is contained in the /gene qualifier. ! 1602: See section 3.5.11.6 for an example. ! 1603: ! 1604: For more information about the Genome Data Base, contact: ! 1605: ! 1606: Genome Data Base ! 1607: 1830 East Monument Street ! 1608: Baltimore, MD 21205 ! 1609: Telephone: (203) 786-5515 ! 1610: ! 1611: 3.5.11.5 Feature Table Examples ! 1612: ! 1613: In the first example a number of key names, feature locations, and ! 1614: qualifiers are illustrated, taken from different sequences. The first ! 1615: table entry is a coding region consisting of a simple span of bases ! 1616: and including a /gene qualifier. In the second table entry, an NAR ! 1617: cross-reference is given (see the previous section for a discussion of ! 1618: these cross-references). The third and fourth table entries use the ! 1619: symbols `<`and `>' to indicate that the beginning or end of the ! 1620: feature is beyond the range of the presented sequence. In the fifth ! 1621: table entry, the symbol `^' indicates that the feature is between ! 1622: bases. In the sixth table entry, the replace operator is shown. ! 1623: ! 1624: ! 1625: 1 10 20 30 40 50 60 70 79 ! 1626: ! 1627: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1628: ! 1629: CDS 5..1261 ! 1630: /note="alpha-1-antitrypsin precursor /map=`14q32.1' ! 1631: /hgml_locus_uid=`LX0081X'" ! 1632: /gene="PI" ! 1633: tRNA 1..87 ! 1634: /note="Leu-tRNA-CAA (NAR: 1057)" ! 1635: /anticodon=(pos:35..37,aa:Leu) ! 1636: mRNA 1..>66 ! 1637: /note="alpha-1-acid glycoprotein mRNA" ! 1638: transposon <1..267 ! 1639: /note="insertion element IS5" ! 1640: misc_recomb 105^106 ! 1641: /note="B.subtilis DNA end/IS5 DNA start" ! 1642: conflict replace(258..258,"t") ! 1643: /citation=[2] ! 1644: ! 1645: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1646: ! 1647: 1 10 20 30 40 50 60 70 79 ! 1648: ! 1649: Example 10. Feature Table Entries ! 1650: ! 1651: The next example shows the representation for a CDS that spans more ! 1652: than one entry. ! 1653: ! 1654: 1 10 20 30 40 50 60 70 79 ! 1655: ! 1656: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1657: ! 1658: LOCUS HUMAPOB1 840 bp ds-DNA PRI 15-JUN-1989 ! 1659: DEFINITION Human apolipoprotein B-100 gene, exons 1 and 2. ! 1660: ACCESSION M15053 ! 1661: KEYWORDS apolipoprotein B-100. ! 1662: SEGMENT 1 of 2 ! 1663: . ! 1664: . ! 1665: . ! 1666: FEATURES Location/Qualifiers ! 1667: sig_peptide 283..354 ! 1668: /note="apolipoprotein B-100 signal peptide" ! 1669: precursor_RNA 155..>840 ! 1670: /note="apoB100 mRNA" ! 1671: intron 356..669 ! 1672: /note="apoB100 intron A" ! 1673: intron 709..>840 ! 1674: /note="apoB100 intron B" ! 1675: . ! 1676: . ! 1677: . ! 1678: // ! 1679: LOCUS HUMAPOB2 13872 bp ss-mRNA PRI 15-JUN-1989 ! 1680: DEFINITION Human apolipoprotein B-100 mRNA, starting at exon 3. ! 1681: ACCESSION M15051 M15054 ! 1682: KEYWORDS apolipoprotein B-100. ! 1683: SEGMENT 2 of 2 ! 1684: . ! 1685: . ! 1686: . ! 1687: FEATURES Location/Qualifiers ! 1688: precursor_RNA <1..13872 ! 1689: /note="apoB100 mRNA" ! 1690: variation 3204 ! 1691: /note="g in lambda-B25; c in lambda B1" ! 1692: CDS join(M15053:283..355,M15053:670..708, ! 1693: 1..13571) ! 1694: /note="apolipoprotein B-100 precursor" ! 1695: mat_peptide join(M15053:355..355,M15053:670..708, ! 1696: 1..13568) ! 1697: /note="apolipoprotein B-100" ! 1698: . ! 1699: . ! 1700: . ! 1701: // ! 1702: ! 1703: ---------+---------+---------+---------+---------+---------+---------+--------- ! 1704: ! 1705: 1 10 20 30 40 50 60 70 79 ! 1706: ! 1707: Example 11. Joining Sequences ! 1708: ! 1709: ! 1710: 3.5.12 ORIGIN Format ! 1711: ! 1712: The ORIGIN record may be left blank, may appear as `Unreported.' or ! 1713: may give a local pointer to the sequence start, usually involving an ! 1714: experimentally determined restriction cleavage site or the genetic ! 1715: locus (if available). The ORIGIN record ends in a period if it ! 1716: contains data, but does not include the period if the record is left ! 1717: empty (in contrast to the KEYWORDS field which contains a period ! 1718: rather than being left blank). ! 1719: ! 1720: 3.5.13 SEQUENCE Format ! 1721: ! 1722: The nucleotide sequence for an entry is found in the records following ! 1723: the ORIGIN record. The sequence is reported in the 5'to 3' direction. ! 1724: There are sixty bases per record, listed in groups of ten bases ! 1725: followed by a blank, starting at position 11 of each record. The ! 1726: number of the first nucleotide in the record is given in columns 4 to ! 1727: 9 (right justified) of the record. ! 1728: ! 1729: 4. FUTURE RELEASES ! 1730: ! 1731: 4.1 Changes Planned for Release 67.0 ! 1732: ! 1733: No changes are planned for Release 67.0. ! 1734: ! 1735: 5. KNOWN PROBLEMS WITH THE GENBANK DATABASE ! 1736: ! 1737: 5.1 Incorrect Gene Symbols in Entries and Index ! 1738: ! 1739: The /gene qualifier should contain gene symbols. In this release, ! 1740: however, the /gene qualifier for many entries incorrectly contains ! 1741: values other than the gene symbol, such as the product or standard ! 1742: name of the gene. The gene symbol index (GBHGM.IDX) is created from ! 1743: the data in the /gene qualifier and therefore contains data other than ! 1744: gene symbols. These errors will be corrected as soon as possible. ! 1745: ! 1746: 6. GENBANK ADMINISTRATION ! 1747: ! 1748: IntelliGenetics Inc., a developer and distributor of molecular biology ! 1749: computer programs and instrumentation, is the primary contractor for ! 1750: the GenBank data bank. IntelliGenetics maintains the computerized data ! 1751: center and oversees data distribution on all media. Under an ! 1752: arrangement with IntelliGenetics, Los Alamos National Laboratory ! 1753: (LANL) gathers, annotates, and organizes sequence data and transmits ! 1754: it to IntelliGenetics. LANL is operated by the University of ! 1755: California for the Department of Energy. ! 1756: ! 1757: The electronic mail address of LANL is [email protected]; their ! 1758: telephone number is (505) 665-2177. The IntelliGenetics address is on ! 1759: the front page of these release notes. ! 1760: ! 1761: 6.1 Registered Trademark Notice ! 1762: ! 1763: GenBank (R) is a registered trademark of the U.S. Department of Health ! 1764: and Human Services for the Genetic Sequence Data Bank operated by ! 1765: IntelliGenetics and Los Alamos National Laboratory under contract with ! 1766: the National Institutes of Health. ! 1767: ! 1768: 6.2 GenBank Sponsorship ! 1769: ! 1770: GenBank is sponsored by the National Institute of General Medical ! 1771: Sciences, NIH; The National Library of Medicine, NIH; and the U.S. ! 1772: Department of Energy. ! 1773: ! 1774: 6.3 Citing GenBank ! 1775: ! 1776: If you have used GenBank in your research, we would appreciate it if ! 1777: you would include a reference to GenBank in all publications related ! 1778: to that research. You may also wish to note that the GenBank data bank ! 1779: is publicly available from IntelliGenetics. ! 1780: ! 1781: When citing data in GenBank, it is appropriate to give the sequence ! 1782: name, primary accession number, and the publication in which the ! 1783: sequence first appeared. If the data are unpublished, we urge you to ! 1784: contact the group which submitted the data to GenBank to see if there ! 1785: is a recent publication or if they have determined any revisions or ! 1786: extensions of the data. ! 1787: ! 1788: It is also appropriate to list a reference for GenBank itself. The ! 1789: following publication, which describes the GenBank data bank, should ! 1790: be cited: ! 1791: ! 1792: Bilofsky, H.S. and Burks, C. The GenBank (R) Genetic Sequence Data Bank. ! 1793: Nucl. Acids Res. 16: 1861-1864 (1988) ! 1794: ! 1795: The following statement is an example of how you may cite GenBank ! 1796: data. It cites the sequence, its primary accession number, the group ! 1797: who determined the sequence, and GenBank. The numbers in brackets ! 1798: refer to one of the GenBank citations above and the REFERENCE in the ! 1799: GenBank sequence entry. ! 1800: ! 1801: `We scanned the GenBank (1) data bank for sequence similarities and ! 1802: found one sequence (2), ! 1803: ! 1804: GenBank accession number J01016, which showed significant ! 1805: similarity...' ! 1806: ! 1807: (1) Bilofsky, H.S. and Burks, C. Nucl. Acids Res. 16: 1861-1864 (1988) ! 1808: (2) Nellen, W. and Gallwitz, D. J. Mol. Biol. 159, 1-18 (1982) ! 1809: ! 1810: 6.4 GenBank Distribution Formats and Media ! 1811: ! 1812: The GenBank data bank is available in three formats on three physical ! 1813: media. The three formats are fixed-length 80-character records, ! 1814: VAX/VMS Backup saveset, and compressed Unix tar archive format. The ! 1815: three media are industry-standard 9-track magnetic tapes, Sun 1/4" QIC ! 1816: 24 format cartridges, and TK-50 cartridges. The following chart ! 1817: specifies which formats are available in each medium. ! 1818: ! 1819: To request a change in the format, media, or density of the tapes you ! 1820: receive, write to the address (or call the telephone number) on the ! 1821: first page of these release notes. ! 1822: ! 1823: FILE FORMATS TAPE MEDIA ! 1824: ! 1825: Unlabelled ASCII VAX/VMS Unix ! 1826: (fixed-length records) Backup Saveset tar tarfile ! 1827: ! 1828: 9-track, 2400' reel ! 1829: ! 1830: 1600 bpi MU M M ! 1831: ! 1832: 6250 bpi MU M M ! 1833: ! 1834: TK-50 cartridge (DEC) NA M NA ! 1835: ! 1836: 1/4" QIC 24 cartridge (Sun) NA NA M ! 1837: ! 1838: MU tapes are available in both mixed-case and uppercase-only formats ! 1839: M tapes are available only in mixed-case characters ! 1840: NA not available ! 1841: ! 1842: Table 1. Tape Media and Formats ! 1843: ! 1844: ! 1845: 6.5 Request for Direct Submission of Sequence Data ! 1846: ! 1847: The growth of nucleotide sequence data is close to exponential. Both ! 1848: the proposed Human Genome sequencing project and the increasing ! 1849: automation of sequencing make it clear that GenBank is going to ! 1850: continue to grow rapidly. A successful GenBank requires that the data ! 1851: enter the data bank as soon as possible after publication, that the ! 1852: annotations be as complete as possible, and that the sequence and ! 1853: annotation data be accurate. All three of these requirements are best ! 1854: met if authors of sequence data submit their data directly to GenBank ! 1855: in a usable form. It is especially important that these submissions be ! 1856: in computer-readable form. ! 1857: ! 1858: GenBank must rely on direct author submission of data to ensure that ! 1859: it achieves its goals of complete, accurate, and timely data. To ! 1860: assist researchers in entering their own sequence data, GenBank has ! 1861: developed AUTHORIN, an easy-to-use program that enables authors to ! 1862: enter a sequence, annotate it, and submit it to GenBank or any of the ! 1863: other data banks. The IBM PC compatible and Macintosh versions of ! 1864: AUTHORIN may be obtained by completing the enclosed AUTHORIN request ! 1865: card or by contacting GenBank at the address shown on the front of ! 1866: these release notes. Versions for the VAX and Sun workstations are ! 1867: also planned and will be announced in future release notes as they ! 1868: become available. ! 1869: ! 1870: For those who are unable to use the Authorin program, GenBank has a ! 1871: printed data submission form. This form is now standardized among ! 1872: EMBL, DDBJ, GenBank, PIR, MIPS, and JIPID. GenBank also provides a ! 1873: corresponding computer-readable data submission form that can be used ! 1874: for electronic mail and floppy disk submissions. The GenBank Data ! 1875: Submission Form (located in the file GBDAT.FRM) can be used to submit ! 1876: your sequence and annotations. Electronic mail submissions should go ! 1877: to the address "GB-SUB%[email protected]"; direct mail should go to our ! 1878: postal address in Los Alamos, which is on the data submission form. ! 1879: ! 1880: 6.6 Request for Corrections and Comments ! 1881: ! 1882: We welcome your suggestions for improvements to GenBank. We are ! 1883: especially interested to learn of errors or inconsistencies in the ! 1884: data. Please use the GenBank Error/Suggestion Report Form, which is ! 1885: part of this distribution of GenBank (located in the file GBDAT.FRM), ! 1886: to send your suggestions and corrections to the address on the first ! 1887: page of these release notes. Please be certain to indicate the GenBank ! 1888: release number (e.g., Release 66.0) and the primary accession number ! 1889: of the entry to which your comments apply; it is helpful if you also ! 1890: give the entry name and the current contents of any data field for ! 1891: which you are recommending a change. ! 1892: ! 1893: 6.7 Disclaimer ! 1894: ! 1895: IntelliGenetics Inc., Los Alamos National Laboratory, and the United ! 1896: States Government make no representations or warranties regarding the ! 1897: content or accuracy of the information. IntelliGenetics Inc., Los ! 1898: Alamos National Laboratory, and the United States Government also make ! 1899: no representations or warranties of merchantibility or fitness for a ! 1900: particular purpose and accept no responsibility for any consequences ! 1901: of the receipt or use of the information. ! 1902: ! 1903: APPENDIX A. Statistical Summary ! 1904: ! 1905: Division Entries Bases Reports ! 1906: ! 1907: PRIMATE 7511 9003383 9493 ! 1908: RODENT 7652 7841099 9176 ! 1909: OTHER MAMMALIAN 1552 1935603 1817 ! 1910: OTHER VERTEBRATE 1876 2142926 2263 ! 1911: INVERTEBRATE 3195 4005462 3811 ! 1912: PLANT 2976 4659180 3636 ! 1913: ORGANELLE 1271 1848854 1569 ! 1914: BACTERIAL 4293 6992664 5528 ! 1915: STRUCTURAL RNA 1647 445723 1946 ! 1916: VIRAL 3707 6439492 4751 ! 1917: PHAGE 593 682556 880 ! 1918: SYNTHETIC 1028 516186 1129 ! 1919: UNANNOTATED 3756 4792964 4909 ! 1920: Total (13 divisions) 41057 51306092 50908 ! 1921: ! 1922: ! 1923: Sequences with greater than 30,000 bp ! 1924: ! 1925: Locus Div Accession Length ! 1926: ! 1927: ADBCG VRL J01917 35937bp ! 1928: CHKMYHE VRT J02714 31111bp ! 1929: HS11UL VRL D00317 108360bp ! 1930: HS4 VRL V01555 172282bp ! 1931: HS5HCMVU VRL X04650 43275bp ! 1932: HUMADAG PRI M13792 36741bp ! 1933: HUMFIXG PRI K02402 38059bp ! 1934: HUMGHCSA PRI J03071 66495bp ! 1935: HUMHBB PRI J00179 73326bp ! 1936: HUMHPRTB PRI M26434 56736bp ! 1937: HUMTPA PRI K03021 36594bp ! 1938: LAMCG PHG J02459 48502bp ! 1939: MPOCPCG ORG X04465 121024bp ! 1940: MUSBGCXD ROD X14061 55856bp ! 1941: PT7CG PHG J02518 39936bp ! 1942: RABBGLOB MAM M18818 44594bp ! 1943: RATCRYG ROD M19359 54670bp ! 1944: TOBCPCG ORG Z00044 155844bp ! 1945: VACCG VRL M35027 191737bp ! 1946: VAZCG VRL X04370 124884bp ! 1947: X14112 UNA X14112 152260bp ! 1948: X14720 UNA X14720 35100bp ! 1949: X15423 UNA X15423 47081bp ! 1950: X15917 UNA X15917 40469bp ! 1951: X17012 UNA X17012 30000bp ! 1952: X17403 UNA X17403 229354bp ! 1953: ! 1954: ! 1955: APPENDIX B. Entries with a change in locus name ! 1956: ! 1957: Accession Rel 65.0 Rel 66.0 ! 1958: -------- --------- --------- ! 1959: J03132 HUMICAM1 HUMICAM1M ! 1960: J04134 MUSCNR MUSCNRA ! 1961: K00319 BEACPTRMF PHVCPTRMF ! 1962: K00336 BEACPTRF PHVCPTRF ! 1963: M22244 BOVSVSP BOVSVSPA ! 1964: M24637 CHKCEK CHKCEK1 ! 1965: M29035 BSUPEPF BSUPEPFA ! 1966: M29579 RATGLUSA RATGLUS ! 1967: M30953 ECOPANA ECOPANF ! 1968: M31077 HUMSTATHG1 HUMSTATH1 ! 1969: M31612 TRBESAGC TRBESAGCA ! 1970: M31628 STMHISOP STMHISOPA ! 1971: M32331 HUMICAM1AA HUMICAM1 ! 1972: M32639 HUMSTATHG2 HUMSTATH2 ! 1973: M36473 ACLP322P ACCP322P ! 1974: X02297 PARSP51A3 PARSP51A4 ! 1975: X03499 DDITRNV DDITGNV ! 1976: X03500 DDITRNE DDITGNE ! 1977: X04083 TVMXGG TVMXCG ! 1978: X12646 HUMRPHO2A HUMAPP2A ! 1979: X12656 HUMPP2A HUMBPP2A ! 1980: X17615 ECOFHUE X17615 ! 1981: Y00448 ECOK2KORB RK2KORB ! 1982: ! 1983: ! 1984: APPENDIX C. Number of entries, reports, and bases by organism ! 1985: ! 1986: PRIMATE ! 1987: ! 1988: Key Name Reports Entries Bases ! 1989: ------------------------------------------------------------------------------- ! 1990: 1. AGM Cercopithecus aethiops 61 42 31391 ! 1991: 2. ATR Aotus trivirgatus 7 7 7557 ! 1992: 3. BAB Papio anubis 3 3 2653 ! 1993: 4. BAB Papio doguera 1 1 2000 ! 1994: 5. BAB Papio hamadryas 7 7 11052 ! 1995: 6. BAB Papio papio 1 1 343 ! 1996: 7. BAB Papio sp. 3 3 1601 ! 1997: 8. CEB Cebus sp. 2 2 190 ! 1998: 9. CEP Cebus apella 7 7 1819 ! 1999: 10. CHP Pan paniscus 1 1 1683 ! 2000: 11. CHP Pan troglodytes 68 53 72174 ! 2001: 12. COL Colobus polykomos 2 2 1494 ! 2002: 13. GCR Galago crassicaudatus 38 38 16345 ! 2003: 14. GIB Hylobates lar 8 6 17024 ! 2004: 15. GOR Gorilla gorilla 19 11 19990 ! 2005: 16. GSE Galago senegalensis 1 1 369 ! 2006: 17. HUM Homo sapiens 9156 7235 8687688 ! 2007: 18. LEM Cheirogaleus medius 1 1 1899 ! 2008: 19. LEM Lemur albifrons 1 1 1786 ! 2009: 20. LEM Lemur macaco 3 3 5590 ! 2010: 21. LEM Lemur sp. 1 1 1380 ! 2011: 22. MAC Macaca fascicularis 8 7 6355 ! 2012: 23. MAC Macaca mulatta 40 28 33283 ! 2013: 24. MAC Macaca nemestrina 1 1 1115 ! 2014: 25. MAC Macaca radiata 2 2 342 ! 2015: 26. MAC Macaca sp. 7 6 7502 ! 2016: 27. MNK Ateles geoffroyi 4 4 13966 ! 2017: 28. MNK Monkey 11 11 2081 ! 2018: 29. ORA Pongo pygmaeus 19 17 36667 ! 2019: 30. SOE Saguinus oedipus 4 4 5207 ! 2020: 31. TAR Tarsius sp. 6 5 10837 ! 2021: ! 2022: Total 9493 7511 9003383 ! 2023: ! 2024: RODENT ! 2025: ! 2026: Key Name Reports Entries Bases ! 2027: ------------------------------------------------------------------------------- ! 2028: 1. DIP Dipodomys ordii 1 1 3318 ! 2029: 2. GPI Cavia cobaya 1 1 491 ! 2030: 3. GPI Cavia cutleri 3 2 4959 ! 2031: 4. GPI Cavia porcellus 23 22 36118 ! 2032: 5. GPI Cavia sp. 2 2 3226 ! 2033: 6. HAM Cricetulus griseus 32 28 38686 ! 2034: 7. HAM Cricetulus longicaudatus 44 31 20752 ! 2035: 8. HAM Cricetulus sp. 37 33 31583 ! 2036: 9. HAM Cricetus cricetus 6 6 11446 ! 2037: 10. HAM Mesocricetus auratus 81 58 77935 ! 2038: 11. HAM Mesocricetus sp. 94 62 47934 ! 2039: 12. MAR Marmota monax 8 6 8563 ! 2040: 13. MUS Mus caroli 18 17 13904 ! 2041: 14. MUS Mus domesticus 24 20 12906 ! 2042: 15. MUS Mus muscaris 56 56 28343 ! 2043: 16. MUS Mus musculus 5821 4884 4299073 ! 2044: 17. MUS Mus pahari 7 7 7763 ! 2045: 18. MUS Mus platythrix 1 1 315 ! 2046: 19. MUS Mus sp. 11 11 9130 ! 2047: 20. MUS Mus spretus 9 7 7454 ! 2048: 21. PER Peromyscus leucopus 3 3 3640 ! 2049: 22. PER Peromyscus maniculatus 11 11 1791 ! 2050: 23. RAT Rattus colletti 4 4 7849 ! 2051: 24. RAT Rattus fuscipes 1 1 1161 ! 2052: 25. RAT Rattus leucopus 3 3 3481 ! 2053: 26. RAT Rattus norvegicus 2599 2144 2797456 ! 2054: 27. RAT Rattus rattus 209 177 284465 ! 2055: 28. RAT Rattus sordidus 1 1 1161 ! 2056: 29. RAT Rattus sp. 56 45 61254 ! 2057: 30. RAT Rattus tunneyi 1 1 1161 ! 2058: 31. RAT Rattus villosissimus 2 2 3369 ! 2059: 32. SEH Spalax ehrenbergi 7 5 10412 ! 2060: ! 2061: Total 9176 7652 7841099 ! 2062: ! 2063: OTHER MAMMALIAN ! 2064: ! 2065: Key Name Reports Entries Bases ! 2066: ------------------------------------------------------------------------------- ! 2067: 1. AXI Axis axis 2 2 1758 ! 2068: 2. BOV Bos bovis 1 1 2363 ! 2069: 3. BOV Bos taurus 755 642 741804 ! 2070: 4. CAT Felis catus 40 40 23293 ! 2071: 5. CAT Felis domesticus 3 3 4748 ! 2072: 6. CAT Felis silvestris 8 6 9516 ! 2073: 7. CAT Felis sp. 1 1 3534 ! 2074: 8. DAV Dasyurus viverrinus 2 2 939 ! 2075: 9. DOG Canis familiaris 55 45 52602 ! 2076: 10. DOG Canis lupus 8 8 7867 ! 2077: 11. DOG Canis sp. 19 18 22470 ! 2078: 12. GOT Capra hircus 46 41 42286 ! 2079: 13. HRS Equus caballus 66 38 32167 ! 2080: 14. LEE Lepus capensis 1 1 434 ! 2081: 15. LEE Lepus europaeus 1 1 3646 ! 2082: 16. MMU Muntiacus muntjak 1 1 807 ! 2083: 17. MVI Mustela vison 3 3 1909 ! 2084: 18. OPO Didelphis virginiana 9 9 7139 ! 2085: 19. ORC Orcinus orca 1 1 1579 ! 2086: 20. PIG Sus scrofa 190 155 242401 ! 2087: 21. RAB Basilea sp. 1 1 377 ! 2088: 22. RAB Oryctolagus cuniculus 420 363 525433 ! 2089: 23. RAB Oryctolagus sp. 57 57 70289 ! 2090: 24. RAB Sylvilagus floridanus 1 1 1065 ! 2091: 25. SEA Halichoerus grypus 3 3 2288 ! 2092: 26. SHP Ovis aries 69 61 87157 ! 2093: 27. SHP Ovis sp. 41 38 35507 ! 2094: 28. SUN Suncus murinus 8 6 6231 ! 2095: 29. VMP Desmodus rotundus 2 1 1725 ! 2096: 30. WAL Macropus eugenii 1 1 754 ! 2097: 31. WAL Macropus robustus 1 1 1465 ! 2098: 32. WAL Macropus rufus 1 1 50 ! 2099: ! 2100: Total 1817 1552 1935603 ! 2101: ! 2102: OTHER VERTEBRATE ! 2103: ! 2104: Key Name Reports Entries Bases ! 2105: ------------------------------------------------------------------------------- ! 2106: 1. ANG Anguilla australis 1 1 2191 ! 2107: 2. APT Ascaphus truei 2 1 1897 ! 2108: 3. BUJ Bufo japonicus 2 2 1116 ! 2109: 4. CHK Gallus domesticus 158 120 174064 ! 2110: 5. CHK Gallus gallus 1040 851 1029779 ! 2111: 6. CPL Carcharhinus plumbeus 4 4 1821 ! 2112: 7. CRC Caiman crocodylus 5 5 2902 ! 2113: 8. DUK Aix sp. 1 1 165 ! 2114: 9. DUK Anas platyrhynchos 15 14 21280 ! 2115: 10. DUK Cairina moschata 30 22 25269 ! 2116: 11. FAL Falco columbarius 1 1 174 ! 2117: 12. FSA Myxine glutinosa 1 1 915 ! 2118: 13. FSA Petromyzon marinus 5 5 9661 ! 2119: 14. FSB Acipenser transmontano 2 1 1140 ! 2120: 15. FSB Anarhichas lupus 1 1 3395 ! 2121: 16. FSB Carassius auratus 12 11 9222 ! 2122: 17. FSB Catostomus commersoni 4 3 1936 ! 2123: 18. FSB Ctenopharyngobon idella 1 1 4243 ! 2124: 19. FSB Cyprinus carpio 18 17 16913 ! 2125: 20. FSB Electrophorus electricus 5 5 8692 ! 2126: 21. FSB Elops saurus 9 5 3870 ! 2127: 22. FSB Fundulus heteroclitus 1 1 1673 ! 2128: 23. FSB Ictalurus punctatus 7 6 5679 ! 2129: 24. FSB Limanda ferruginea 1 1 416 ! 2130: 25. FSB Lophius americanus 8 5 2942 ! 2131: 26. FSB Macrozoarces americanus 3 3 2657 ! 2132: 27. FSB Misgurnus fossilis 2 2 1697 ! 2133: 28. FSB Oncorhynchus keta 30 26 23515 ! 2134: 29. FSB Oncorhynchus kisutch 2 2 3221 ! 2135: 30. FSB Oncorhynchus tschawytscha 3 3 1862 ! 2136: 31. FSB Paralichthys olivaceus 7 5 4859 ! 2137: 32. FSB Pseudopleuronectus americanus 8 6 3002 ! 2138: 33. FSB Salmo gairdneri 52 48 40813 ! 2139: 34. FSB Salmo irideus 1 1 1278 ! 2140: 35. FSB Salmo salar 8 6 6764 ! 2141: 36. FSB Thunnus thynnus 1 1 911 ! 2142: 37. FSC Torpedo californica 21 13 23035 ! 2143: 38. FSC Torpedo marmorata 7 7 9992 ! 2144: 39. GOO Anser anser 2 2 4906 ! 2145: 40. GRE Geoclemys reevessi 1 1 239 ! 2146: 41. HEF Heterodontus francisci 34 29 19173 ! 2147: 42. KRY Kryptophaneron alfredi 1 1 1230 ! 2148: 43. LSE Laticauda semifasciata 1 1 483 ! 2149: 44. LSL Laticauda laticaudata 2 1 632 ! 2150: 45. MRG Mergus serrator 1 1 2574 ! 2151: 46. NEW Cynops pyrrhogaster 1 1 629 ! 2152: 47. NVI Notophthalmus viridescens 10 10 1458 ! 2153: 48. ORN Oreochromis mossambicus 2 1 237 ! 2154: 49. ORN Oreochromis niloticus 1 1 847 ! 2155: 50. PAG Pagrus major 2 1 906 ! 2156: 51. PGN Columba sp. 2 2 1665 ! 2157: 52. PHS Phasianus colchicus 1 1 739 ! 2158: 53. PHU Phyllomedusa bicolor 1 1 781 ! 2159: 54. PHU Phyllomedusa sauvagei 2 2 1315 ! 2160: 55. PLS Phylloscopus trochilus 6 3 2593 ! 2161: 56. PYU Pyura stolonifera 7 7 1029 ! 2162: 57. QUL Coturnix coturnix 50 35 36670 ! 2163: 58. QUL Coturnix japonica 1 1 311 ! 2164: 59. RAN Rana catesbeiana 10 8 6949 ! 2165: 60. RAN Rana pipiens 4 3 1625 ! 2166: 61. RAN Rana temporaria 19 14 7422 ! 2167: 62. SCC Scyliorhinus caniculus 2 2 667 ! 2168: 63. SEQ Seriola quinqueradiata 1 1 879 ! 2169: 64. SKT Raja erinacea 8 8 10209 ! 2170: 65. SMD Triturus vulgaris 4 4 901 ! 2171: 66. SMR Pleurodeles waltlii 5 4 2305 ! 2172: 67. SNK Aipysurus laevis 6 3 1332 ! 2173: 68. SNK Bothrops atrox 8 7 11423 ! 2174: 69. SNK Crotalus durissus 3 2 1263 ! 2175: 70. SNK Elaphe radiata 1 1 2483 ! 2176: 71. SNK Naja naja 1 1 312 ! 2177: 72. SNK Natrix tessellata 1 1 312 ! 2178: 73. SNK Notechis scutatus 2 1 621 ! 2179: 74. SRA Hemitripterus americanus 2 2 3294 ! 2180: 75. TKY Meleagris gallopavo 16 14 6836 ! 2181: 76. VIA Vipera ammodytes 2 1 607 ! 2182: 77. XEB Xenopus borealis 27 26 19249 ! 2183: 78. XEC Xenopus clivii 6 6 1406 ! 2184: 79. XEL Xenopus laevis 503 440 505221 ! 2185: 80. XET Xenopus tropicalis 11 8 14850 ! 2186: 81. XIP Xiphophorus maculatus 4 2 983 ! 2187: 82. XIP Xiphophorus sp. 2 1 4135 ! 2188: 83. ZEF Brachydanio rerio 8 6 4264 ! 2189: ! 2190: Total 2263 1876 2142926 ! 2191: ! 2192: INVERTEBRATE ! 2193: ! 2194: Key Name Reports Entries Bases ! 2195: ------------------------------------------------------------------------------- ! 2196: 1. ACA Acanthamoeba castellanii 32 28 28156 ! 2197: 2. ACP Acropora formosa 2 2 236 ! 2198: 3. ACP Acropora latistella 3 3 354 ! 2199: 4. ADO Acheta domesticus 1 1 541 ! 2200: 5. AEI Aequipecten irradians 2 2 1253 ! 2201: 6. AEV Aequorea victoria 4 4 2595 ! 2202: 7. AME Apis melifica 2 2 897 ! 2203: 8. AMF Apis mellifera 8 8 2082 ! 2204: 9. APL Aplysia californica 35 32 28418 ! 2205: 10. APL Aplysia sp. 9 9 9086 ! 2206: 11. APO Antheraea polyphemus 33 33 16883 ! 2207: 12. APY Antheraea yamamai 1 1 1200 ! 2208: 13. ARB Arbacia punctulata 3 2 5078 ! 2209: 14. BBO Babesia bovis 4 4 2482 ! 2210: 15. BBO Babesia rodhaini 1 1 3238 ! 2211: 16. BMO Bombyx mandarina 3 3 2712 ! 2212: 17. BMO Bombyx mori 152 120 87988 ! 2213: 18. BPL Brachionus plicatilis 1 1 120 ! 2214: 19. BRP Brugia malayi 9 8 8730 ! 2215: 20. BRP Brugia pahangi 2 2 4893 ! 2216: 21. BUG Bugula neritina 1 1 120 ! 2217: 22. CAF Calanus finmarchicus 1 1 1487 ! 2218: 23. CAR Carcinoscorpius rotundicauda 1 1 983 ! 2219: 24. CAV Calliphora vicina 11 7 16088 ! 2220: 25. CBL Trichoplusia ni 1 1 2475 ! 2221: 26. CCA Caledia captiva 12 12 11713 ! 2222: 27. CEI Ceratitis capitata 1 1 1115 ! 2223: 28. CEL Caenorhabditis briggsae 7 4 5300 ! 2224: 29. CEL Caenorhabditis elegans 139 108 228239 ! 2225: 30. CER Calliphora erythrocephala 6 6 1677 ! 2226: 31. CHI Chironomus pallidivittatus 21 16 5529 ! 2227: 32. CHI Chironomus tentans 22 20 20059 ! 2228: 33. CHI Chironomus thummi 32 30 32150 ! 2229: 34. CLM Clam sp. 1 1 2163 ! 2230: 35. CLM Spisula solidissima 2 2 3577 ! 2231: 36. CPD Colpidium campylum 1 1 76 ! 2232: 37. CPD Colpidium colpoda 1 1 76 ! 2233: 38. CRB Cardisoma guanhumi 3 3 1992 ! 2234: 39. CRB Gecarcinus lateralis 4 4 6714 ! 2235: 40. CRB Geryon quinquedens 1 1 85 ! 2236: 41. CRB Limulus polyphemus 4 4 4886 ! 2237: 42. CRB Paguras pollicaris 4 4 419 ! 2238: 43. CUL Culex pipiens 1 1 3105 ! 2239: 44. DDI Dictyostelium discoideum 282 215 215990 ! 2240: 45. DDI Dictyostelium sp. 2 1 4439 ! 2241: 46. DEM Dermasterias imbricata 2 2 1016 ! 2242: 47. DEP Dermatophagoides pteronyssinus 2 1 824 ! 2243: 48. DIA Diadromus pulchellus 1 1 324 ! 2244: 49. DIC Dicyema misakiense 1 1 116 ! 2245: 50. DIR Dirofilaria immitis 2 2 2791 ! 2246: 51. DRE Drosophila erecta 4 4 4847 ! 2247: 52. DRF Drosophila funebris 2 1 3002 ! 2248: 53. DRG Drosophila gymnobasis 10 10 1793 ! 2249: 54. DRH Drosophila heteroneura 1 1 922 ! 2250: 55. DRH Drosophila hydei 18 15 26936 ! 2251: 56. DRH Drosophila irilis 1 1 1602 ! 2252: 57. DRI Drosophila grimshawi 3 3 3860 ! 2253: 58. DRL Drosophila silvarentis 2 2 356 ! 2254: 59. DRM Drosophila mauritiana 6 4 8528 ! 2255: 60. DRN Drosophila navojoa 2 1 2334 ! 2256: 61. DRN Drosophila nebulosa 2 2 2991 ! 2257: 62. DRO Drosophila melanogaster 1242 1001 1581360 ! 2258: 63. DRO Drosophila subobscura 2 2 4827 ! 2259: 64. DRP Drosophila pseudoobscura 14 7 38083 ! 2260: 65. DRQ Drosophila sechellia 3 2 5559 ! 2261: 66. DRR Drosophila orena 7 4 7293 ! 2262: 67. DRS Drosophila simulans 23 18 21926 ! 2263: 68. DRS Drosophila sp. 2 2 5761 ! 2264: 69. DRT Drosophila teissieri 4 4 7787 ! 2265: 70. DRU Drosophila mulleri 1 1 6778 ! 2266: 71. DRV Drosophila virilis 47 37 72725 ! 2267: 72. DRW Drosophila mojavensis 6 5 21612 ! 2268: 73. DRY Drosophila yakuba 1 1 1853 ! 2269: 74. ECC Echinococcus granulosus 2 2 846 ! 2270: 75. EIM Eimeria acervulina 4 2 1764 ! 2271: 76. EIM Eimeria tenella 5 4 4629 ! 2272: 77. ENH Entamoeba histolytica 15 14 10247 ! 2273: 78. EPH Ephydatia mulleri 1 1 2895 ! 2274: 79. EUC Eurypelma californicum 1 1 1579 ! 2275: 80. EWA Euplotes aediculatus 1 1 1882 ! 2276: 81. EWC Euplotes crassus 2 2 1427 ! 2277: 82. EWE Euplotes eurystomus 2 1 930 ! 2278: 83. EWR Euplotes raikovi 1 1 593 ! 2279: 84. FFL Luciola cruciata 1 1 1985 ! 2280: 85. FHE Fasciola hepatica 1 1 894 ! 2281: 86. GCH Glaucoma chattoni 3 3 564 ! 2282: 87. GLA Giardia lamblia 14 10 9487 ! 2283: 88. GLA Giardia sp. 1 1 831 ! 2284: 89. GLY Glycera dibranchiata 1 1 745 ! 2285: 90. GMO Glossina austeni 1 1 653 ! 2286: 91. GMO Glossina fuscipes 1 1 239 ! 2287: 92. GMO Glossina morsitans 7 7 3244 ! 2288: 93. GMO Glossina palpalis 1 1 236 ! 2289: 94. HAE Haemonchus contortus 4 4 3557 ! 2290: 95. HCE Hyalophora cecropia 11 11 6608 ! 2291: 96. HEL Heliothis virescens 1 1 2977 ! 2292: 97. HIR Hirudo medicinalis 1 1 379 ! 2293: 98. HLT Haliotis corrugata 1 1 650 ! 2294: 99. HLT Haliotis rufescens 1 1 642 ! 2295: 100. HOL Holothuria polii 5 5 1964 ! 2296: 101. HOL Holothuria tubulosa 1 1 441 ! 2297: 102. HYD Hydra sp. 2 2 4555 ! 2298: 103. LAN Lingula anatina 1 1 120 ! 2299: 104. LAR Lampetra reissneri 1 1 120 ! 2300: 105. LEI Leishmania donovani 10 6 10013 ! 2301: 106. LEI Leishmania enriettae 4 4 1562 ! 2302: 107. LEI Leishmania enriettii 4 4 4213 ! 2303: 108. LEI Leishmania major 10 8 9788 ! 2304: 109. LEI Leishmania sp. 4 4 8884 ! 2305: 110. LEI Leishmania tropica 1 1 1851 ! 2306: 111. LIT Litomosoides carinii 2 2 214 ! 2307: 112. LMI Locusta migratoria 5 5 3039 ! 2308: 113. LOA Loa loa 1 1 839 ! 2309: 114. LUM Lumbricus terrestris 2 2 5061 ! 2310: 115. LYM Lymnaea stagnalis 2 2 1764 ! 2311: 116. MDO Musca domestica 3 2 2916 ! 2312: 117. MOT Manduca sexta 25 22 40693 ! 2313: 118. MSQ Aedes aegypti 4 4 8350 ! 2314: 119. MSQ Anopheles gambiae 21 21 7322 ! 2315: 120. NEM Ascaris lumbricoides 35 34 17038 ! 2316: 121. NEM Ascaris suum 2 2 6079 ! 2317: 122. NEP Nephila clavipes 1 1 2336 ! 2318: 123. NGR Naegleria gruberi 4 4 6389 ! 2319: 124. OCT Octopus dofleini 1 1 1315 ! 2320: 125. OCT Paroctopus defleini 1 1 1675 ! 2321: 126. OFA Oxytricha fallax 34 13 9421 ! 2322: 127. OMM Ommastrephes sloanei 2 2 1825 ! 2323: 128. ONG Onchocerca sp. 2 2 214 ! 2324: 129. ONG Onchocerca volvulus 25 24 15477 ! 2325: 130. ONO Oxytricha nova 21 21 20172 ! 2326: 131. OWE Owenia fusiformis 1 1 1548 ! 2327: 132. PAA Parascaris sp. 2 2 215 ! 2328: 133. PAL Paracentrotus lividus 11 9 13481 ! 2329: 134. PAR Paramecium aurelia 5 5 1190 ! 2330: 135. PAR Paramecium primaurelia 8 8 12822 ! 2331: 136. PAR Paramecium tetraurelia 20 17 9174 ! 2332: 137. PBA Plasmodium gallinaceum 1 1 799 ! 2333: 138. PBE Plasmodium berghei 9 9 11176 ! 2334: 139. PBS Plasmodium brasilianum 2 2 3010 ! 2335: 140. PCH Plasmodium chabaudi 11 9 17151 ! 2336: 141. PCR Philosamia cynthia ricini 2 2 240 ! 2337: 142. PCY Plasmodium cynomolgi 6 6 7875 ! 2338: 143. PFA Plasmodium falciparum 168 138 216729 ! 2339: 144. PFA Plasmodium fragile 2 1 2307 ! 2340: 145. PIO Pisaster ochraceus 5 5 9699 ! 2341: 146. PKN Plasmodium knowlesi 11 9 8880 ! 2342: 147. PLM Plasmodium malariae 1 1 1545 ! 2343: 148. PLM Plasmodium reichenowi 1 1 654 ! 2344: 149. PLO Plasmodium lophurae 6 5 6087 ! 2345: 150. PMC Pneumocystis carinii 10 6 5670 ! 2346: 151. PMI Prorocentrum micans 2 1 2451 ! 2347: 152. PNG Panagrellus redivivus 2 2 322 ! 2348: 153. PNG Panagrellus silusiae 1 1 682 ! 2349: 154. PPY Photinus pyralis 1 1 2387 ! 2350: 155. PVI Plasmodium vivax 13 7 8966 ! 2351: 156. PYO Plasmodium yoelii 15 11 21793 ! 2352: 157. SAR Sarcocystis gigantea 3 3 473 ! 2353: 158. SCA Schistocerca americana 3 3 3458 ! 2354: 159. SCA Schistocerca nitans 2 2 711 ! 2355: 160. SCI Sciara coprophila 2 2 822 ! 2356: 161. SCM Schistosoma japonicum 10 9 9090 ! 2357: 162. SCM Schistosoma mansoni 58 52 46518 ! 2358: 163. SCR Androctonus australis 7 7 2563 ! 2359: 164. SEM Parastichopus parvimensis 1 1 1458 ! 2360: 165. SHR Artemia salina 21 20 14517 ! 2361: 166. SHR Artemia sp. 11 8 6407 ! 2362: 167. SLE Stylonychia lemnae 4 4 7237 ! 2363: 168. SLU Stylonychia pustulata 5 5 2820 ! 2364: 169. SPE Sarcophaga peregrina 7 7 6405 ! 2365: 170. SPF Spodoptera frugiperda 5 5 7382 ! 2366: 171. SQD Loligo pealii 1 1 3693 ! 2367: 172. STF Asterina pectinifera 1 1 2180 ! 2368: 173. SUH Hemicentrotus pulcherrimus 1 1 2413 ! 2369: 174. SUL Lytechinus pictus 14 13 10476 ! 2370: 175. SUL Lytechinus variegatus 16 16 12102 ! 2371: 176. SUP Psammechinus miliaris 50 38 25964 ! 2372: 177. SUS Strongylocentrotus drobachiensis 4 4 1256 ! 2373: 178. SUS Strongylocentrotus franciscanus 2 2 3832 ! 2374: 179. SUS Strongylocentrotus purpuratus 167 158 114993 ! 2375: 180. SUT Tripneustes gratilla 13 7 10207 ! 2376: 181. SUU Sea urchin 12 12 2632 ! 2377: 182. TAE Taenia solium 3 2 3737 ! 2378: 183. TAT Tachypleus tridentatus 1 1 946 ! 2379: 184. TCA Tribolium castaneum 1 1 707 ! 2380: 185. TCK Boophilus microplus 2 1 2225 ! 2381: 186. TCS Trichostrongylus colubriformis 2 2 1987 ! 2382: 187. TEC Tetrahymena cosmopolitanis 1 1 511 ! 2383: 188. TEH Tetrahymena hyperangularis 2 2 767 ! 2384: 189. TEL Tetrahymena leucophrys 1 1 75 ! 2385: 190. TEM Tetrahymena malaccensis 1 1 507 ! 2386: 191. TEN Tenebrio molitor 23 23 5207 ! 2387: 192. TEP Tetrahymena paravorax 1 1 74 ! 2388: 193. TEP Tetrahymena pigmentosa 4 4 3072 ! 2389: 194. TES Tetrahymena sonneborni 1 1 511 ! 2390: 195. TET Tetrahymena thermophila 64 61 49075 ! 2391: 196. TEU Tetrahymena patula 1 1 75 ! 2392: 197. TEX Tetrahymena vorax 1 1 75 ! 2393: 198. TEY Tetrahymena pyriformis 13 11 10560 ! 2394: 199. THE Theileria annulata 2 2 2859 ! 2395: 200. THE Theileria parva 3 3 6729 ! 2396: 201. TOX Toxoplasma gondii 10 10 12582 ! 2397: 202. TRB Trypanosoma brucei 252 223 288704 ! 2398: 203. TRC Trypanosoma cruzi 35 33 31153 ! 2399: 204. TRE Trypanosoma equiperdum 6 4 3816 ! 2400: 205. TRF Crithidia fasciculata 16 12 20239 ! 2401: 206. TRI Trichomonas vaginalis 1 1 582 ! 2402: 207. TRL Leptomonas collosoma 1 1 154 ! 2403: 208. TRL Leptomonas seymouri 6 4 2130 ! 2404: 209. TRO Trypanosoma congolense 9 9 8879 ! 2405: 210. TRV Trypanosoma vivax 2 2 857 ! 2406: 211. TRY Trypanosoma rangeli 1 1 153 ! 2407: 212. TSR Trichinella spiralis 3 2 2138 ! 2408: 213. UCA Urechis caupo 1 1 718 ! 2409: 214. VAH Vargula hilgendorfii 1 1 1818 ! 2410: 215. VAI Vairimorpha necatrix 1 1 1244 ! 2411: 216. VUI Eupelmus vuilleti 1 1 106 ! 2412: 217. WSP Dolichovespula maculata 2 2 1367 ! 2413: 218. WUC Wuchereria bancrofti 1 1 1323 ! 2414: ! 2415: Total 3811 3195 4005462 ! 2416: ! 2417: PLANT ! 2418: ! 2419: Key Name Reports Entries Bases ! 2420: ------------------------------------------------------------------------------- ! 2421: 1. ABG Absidia glauca 2 1 1011 ! 2422: 2. ACK Achlya ambisexualis 1 1 1121 ! 2423: 3. ACK Achlya bisexualis 1 1 1809 ! 2424: 4. ACK Achlya klebsiana 1 1 1254 ! 2425: 5. ACT Actinidia chinensis 8 5 5231 ! 2426: 6. ACT Actinidia deliciosa 1 1 634 ! 2427: 7. AEG Aegilops tauschii 1 1 421 ! 2428: 8. ALC Allium cepa 3 3 1135 ! 2429: 9. ALF Medicago sativa 29 18 26748 ! 2430: 10. AMA Antirrhinum majus 11 7 11860 ! 2431: 11. APE Acremonium chrysogenum 2 2 2410 ! 2432: 12. ASA Aspergillus awamori 4 3 7873 ! 2433: 13. ASG Aspergillus niger 12 9 18564 ! 2434: 14. ASL Aessosporon salmonicolor 1 1 119 ! 2435: 15. ASN Aspergillus nidulans 49 42 89815 ! 2436: 16. ASO Aspergillus oryzae 13 10 14743 ! 2437: 17. AST Avena sativa 8 8 22641 ! 2438: 18. ATH Arabidopsis thaliana 94 76 136042 ! 2439: 19. AVO Persea americana 3 3 4672 ! 2440: 20. BJE Bjerkandera adusta 1 1 118 ! 2441: 21. BLY Hordeum vulgare 91 72 86901 ! 2442: 22. BNA Brassica napus 25 21 23597 ! 2443: 23. BOL Brassica campestris 8 5 5320 ! 2444: 24. BOL Brassica juncea 3 2 356 ! 2445: 25. BOL Brassica oleracea 12 9 3859 ! 2446: 26. BRM Bremia lactucae 1 1 2869 ! 2447: 27. BRN Bertholletia excelsa 1 1 621 ! 2448: 28. CAG Canavalia gladiata 3 2 4797 ! 2449: 29. CCI Coprinus cinereus 2 2 6091 ! 2450: 30. CEN Canavalia ensiformis 1 1 1027 ! 2451: 31. CFU Caldariomyces fumago 2 1 2787 ! 2452: 32. CHE Chenopodium rubrum 6 3 1865 ! 2453: 33. CHL Chlorella protothecoides 2 1 1332 ! 2454: 34. CHL Chlorella sp. 6 6 1019 ! 2455: 35. CIP Mesembryanthemum crystallinum 11 8 25401 ! 2456: 36. CLC Claviceps purpurea 2 2 758 ! 2457: 37. CLI Citrus limon 3 3 4958 ! 2458: 38. CLR Clarkia unguiculata 2 1 2040 ! 2459: 39. CNA Citrullus vulgaris 1 1 1334 ! 2460: 40. COA Convolvulus arvensis 4 4 4549 ! 2461: 41. COC Cochliobolus heterostrophus 2 2 2634 ! 2462: 42. COG Colletotrichum capsici 1 1 2557 ! 2463: 43. COG Colletotrichum gloeosporioides 1 1 1749 ! 2464: 44. COG Colletotrichum graminicola 2 2 5286 ! 2465: 45. COT Gossypium hirsutum 9 9 13403 ! 2466: 46. CPA Carica papaya 3 3 2037 ! 2467: 47. CPA Cyanophora paradoxa 1 1 528 ! 2468: 48. CRE Chlamydomonas reinhardtii 49 38 52939 ! 2469: 49. CTR Catharanthus roseus 1 1 1740 ! 2470: 50. CUC Cucurbita maxima 5 3 15360 ! 2471: 51. CUC Cucurbita moschata 2 1 1781 ! 2472: 52. CUC Cucurbita pepo 8 8 7363 ! 2473: 53. CUS Cucumis melo 1 1 1137 ! 2474: 54. CUS Cucumis sativus 13 12 12742 ! 2475: 55. DAR Daucus carota 11 9 11820 ! 2476: 56. DBI Dolichos biflorus 3 3 5384 ! 2477: 57. DUN Dunaliella salina 3 2 2541 ! 2478: 58. EGR Euglena gracilis 9 6 9011 ! 2479: 59. EPA Endothia parasitica 5 3 3809 ! 2480: 60. EPK Ephedra kokanica 2 1 120 ! 2481: 61. ERG Erysiphe graminis 1 1 2475 ! 2482: 62. FIL Filobasidium capsuligenum 1 1 118 ! 2483: 63. FIL Filobasidium floriforme 1 1 118 ! 2484: 64. FLX Linum usitatissimum 5 5 1726 ! 2485: 65. FSO Fusarium oxysporum 2 2 1347 ! 2486: 66. FSO Fusarium solani 3 3 5508 ! 2487: 67. FSO Fusarium sporotrichioides 2 1 1908 ! 2488: 68. FTR Flaveria trinervia 1 1 752 ! 2489: 69. GCO Gracilaria tikvahiae 1 1 1771 ! 2490: 70. GCO Gracilaria verrucosa 1 1 1771 ! 2491: 71. GNG Gnetum gnemon 2 1 120 ! 2492: 72. GRO Gracilariopsis sp. 1 1 1782 ! 2493: 73. HAS Hansenula anomala 2 1 2132 ! 2494: 74. HAS Hansenula polymorpha 2 1 3637 ! 2495: 75. HEV Hevea brasiliensis 1 1 1008 ! 2496: 76. HNN Helianthus annuus 6 4 5752 ! 2497: 77. HRA Armoracia rusticana 2 2 5828 ! 2498: 78. IPB Ipomoea batatas 9 7 11859 ! 2499: 79. LGI Lemna gibba 6 6 5024 ! 2500: 80. LGI Lemna minor 1 1 119 ! 2501: 81. LIL Lilium henryi 1 1 9345 ! 2502: 82. LOL Lolium perenne 2 2 2082 ! 2503: 83. LUP Lupinus luteus 20 15 5280 ! 2504: 84. MAQ Marsilia quadrifolia 2 1 155 ! 2505: 85. MIN Matthiola incana 1 1 509 ! 2506: 86. MRA Mucor racemosus 8 7 6601 ! 2507: 87. MRM Mucor circinelloides 1 1 4399 ! 2508: 88. MRM Mucor miehei 2 2 3316 ! 2509: 89. MRP Mucor pusillus 1 1 1965 ! 2510: 90. MZE Zea mays 235 193 295885 ! 2511: 91. MZE Zea mexicana 2 2 360 ! 2512: 92. NAN Nanochlorum eucaryotum 2 1 1796 ! 2513: 93. NEU Neurospora crassa 116 102 168075 ! 2514: 94. OCH Ochromonas danica 1 1 1789 ! 2515: 95. PAN Podospora anserina 3 3 1901 ! 2516: 96. PAP Papaver somniferum 2 2 864 ! 2517: 97. PBL Phycomyces blakesleeanus 3 3 545 ! 2518: 98. PCP Physcomitrella patens 1 1 2544 ! 2519: 99. PEA Pisum sativum 81 72 85166 ! 2520: 100. PEC Penicillium chrysogenum 7 6 20758 ! 2521: 101. PEP Penicillium patulum 1 1 6357 ! 2522: 102. PET Petunia hybrida 37 31 28787 ! 2523: 103. PET Petunia sp. 25 24 13154 ! 2524: 104. PHA Phanerochaete chrysosporium 14 10 18832 ! 2525: 105. PHN Pharbitis nil 10 5 534 ! 2526: 106. PHO Petroselinum hortense 1 1 1431 ! 2527: 107. PHT Phytophthora megasperma 4 2 3031 ! 2528: 108. PHV Phaseolus lunatus 1 1 926 ! 2529: 109. PHV Phaseolus vulgaris 48 37 43358 ! 2530: 110. PIN Pinus contorta 1 1 745 ! 2531: 111. PIN Pinus sylvestris 2 1 583 ! 2532: 112. PIN Pinus thunbergii 4 2 1889 ! 2533: 113. PMI Prorocentrum micans 2 1 3408 ! 2534: 114. POA Polytomella agilis 3 3 6616 ! 2535: 115. POM Polystichum munitum 4 4 4645 ! 2536: 116. POP Populus sp. 17 10 3776 ! 2537: 117. POT Solanum tuberosum 59 52 81544 ! 2538: 118. PSJ Psathyrostachys juncea 2 2 2035 ! 2539: 119. PTE Porphyra umbilicalis 2 1 121 ! 2540: 120. PUM Petroselinum crispum 10 10 6270 ! 2541: 121. PYL Pylaiella littoralis 2 1 1644 ! 2542: 122. RAD Raphanus sativus 9 6 2470 ! 2543: 123. RCC Ricinus communis 6 6 10485 ! 2544: 124. RCH Rhizopus chinensis 1 1 1133 ! 2545: 125. RCH Rhizopus niveus 2 2 3448 ! 2546: 126. RCH Rhizopus oryzae 1 1 2290 ! 2547: 127. RDT Rhodotorula rubra 2 1 3586 ! 2548: 128. RHD Rhodosporidium toruloides 2 2 3181 ! 2549: 129. RHP Parasponia andersonii 1 1 1520 ! 2550: 130. RHP Parasponia rhizobium 2 2 5530 ! 2551: 131. RIC Oryza sativa 81 56 78071 ! 2552: 132. RYE Secale cereale 3 3 5870 ! 2553: 133. SAL Sinapis alba 12 8 8316 ! 2554: 134. SCN Schwanniomyces occidentalis 2 1 2292 ! 2555: 135. SCO Schizophyllum commune 5 5 4836 ! 2556: 136. SES Sesbania rostrata 6 5 3948 ! 2557: 137. SIP Silene pratensis 4 4 3165 ! 2558: 138. SLM Physarum polycephalum 59 49 52689 ! 2559: 139. SOY Glycine max 144 111 165611 ! 2560: 140. SPI Spinacia oleracea 37 30 34346 ! 2561: 141. SRG Sorghum bicolor 9 5 6336 ! 2562: 142. SRG Sorghum sp. 2 1 4638 ! 2563: 143. SSI Scilla siberica 4 4 204 ! 2564: 144. SSY Sisymbrium irio 2 1 433 ! 2565: 145. TDA Thaumatococcus daniellii 1 1 931 ! 2566: 146. TFR Trifolium repens 2 1 1268 ! 2567: 147. THI Thinopyrum elongatum 1 1 1375 ! 2568: 148. TLA Thermomyces lanuginosus 6 5 3804 ! 2569: 149. TOB Nicotiana alata 1 1 804 ! 2570: 150. TOB Nicotiana plumbaginifolia 12 11 22286 ! 2571: 151. TOB Nicotiana rustica 2 2 593 ! 2572: 152. TOB Nicotiana sylvestris 4 4 1382 ! 2573: 153. TOB Nicotiana tabacum 67 51 71765 ! 2574: 154. TOM Lycopersicon esculentum 91 72 94920 ! 2575: 155. TOM Lycopersicon peruvianum 1 1 480 ! 2576: 156. TRD Tripsacum dactyloides 6 6 1528 ! 2577: 157. TRH Trichosanthes kirilowii 2 2 2237 ! 2578: 158. TRR Trichoderma reesei 4 4 8343 ! 2579: 159. TRT Trema tomentosa 2 1 1727 ! 2580: 160. URO Uromyces appendiculatus 1 1 1449 ! 2581: 161. USM Ustilago maydis 3 2 2656 ! 2582: 162. VFA Vicia faba 39 33 29444 ! 2583: 163. VIR Vigna mungo 2 1 1314 ! 2584: 164. VIR Vigna radiata 5 4 4354 ! 2585: 165. VVC Volvox carteri 11 9 17792 ! 2586: 166. WHT Triticum aestivum 100 79 115801 ! 2587: 167. WHT Triticum durum 1 1 898 ! 2588: 168. WHT Triticum sp. 8 8 8441 ! 2589: 169. WHT Triticum vulgare 1 1 965 ! 2590: 170. YS1 Zygosaccharomyces fermentati 1 1 5416 ! 2591: 171. YS2 Saccharomycopsis fibuligera 3 3 9339 ! 2592: 172. YS4 Candida boidinii 2 2 1863 ! 2593: 173. YS5 Candida glabrata 3 3 2758 ! 2594: 174. YSA Candida albicans 11 8 13498 ! 2595: 175. YSB Candida tropicalis 16 13 23751 ! 2596: 176. YSC Saccharomyces cerevisiae 1131 933 1716468 ! 2597: 177. YSCTY Transposable element TY1 53 44 52430 ! 2598: 178. YSD Saccharomyces diastaticus 4 4 4319 ! 2599: 179. YSD Saccharomyces douglassi 1 1 4072 ! 2600: 180. YSE Candida pelliculosa 1 1 5327 ! 2601: 181. YSF Candida maltosa 5 4 8167 ! 2602: 182. YSG Saccharomyces carlsbergensis 23 20 38053 ! 2603: 183. YSH Hansenula wingei 3 3 720 ! 2604: 184. YSI Saccharomyces fibuligera 2 2 6761 ! 2605: 185. YSJ Yarrowia lipolytica 8 7 17412 ! 2606: 186. YSK Kluyveromyces lactis 41 32 86137 ! 2607: 187. YSM Hansenula polymorpha 3 3 8018 ! 2608: 188. YSN Kluyveromyces fragilis 1 1 4193 ! 2609: 189. YSO Zygosaccharomyces rouxii 5 3 15025 ! 2610: 190. YSP Schizosaccharomyces japonicus 1 1 108 ! 2611: 191. YSP Schizosaccharomyces malidevorans 1 1 107 ! 2612: 192. YSP Schizosaccharomyces octosporus 1 1 109 ! 2613: 193. YSP Schizosaccharomyces pombe 135 114 206826 ! 2614: 194. YSQ Pichia pastoris 3 3 899 ! 2615: 195. YSS Cephalosporium acremonium 5 5 2757 ! 2616: 196. YST Yeast sp. 38 37 17556 ! 2617: 197. YSU Candida utilis 4 4 7578 ! 2618: 198. YSV Saccharomyces uvarum 1 1 2001 ! 2619: 199. YSW Kluyveromyces drosophilarum 1 1 4757 ! 2620: 200. YSX Saccharomyces rosei 1 1 278 ! 2621: 201. YSY Saccharomyces kluyveri 5 4 2875 ! 2622: 202. YSZ Zygosaccharomyces bailii 1 1 5415 ! 2623: 203. ZAM Zamia pumila 1 1 1813 ! 2624: ! 2625: Total 3636 2976 4659180 ! 2626: ! 2627: ORGANELLE ! 2628: ! 2629: Key Name Reports Entries Bases ! 2630: ------------------------------------------------------------------------------- ! 2631: 1. ABGMT Mitochondrion Absidia glauca 1 1 596 ! 2632: 2. ACUCP Chloroplast Acorus calamus 1 1 103 ! 2633: 3. AEGCP Chloroplast Aegilops crassa 2 1 1436 ! 2634: 4. AEGCP Chloroplast Aegilops squarrosa 1 1 203 ! 2635: 5. AKOMT Mitochondrion Akodon aerosus 6 6 2406 ! 2636: 6. AKOMT Mitochondrion Akodon andinus 1 1 401 ! 2637: 7. AKOMT Mitochondrion Akodon boliviensis 2 2 802 ! 2638: 8. AKOMT Mitochondrion Akodon jelskii 3 3 1203 ! 2639: 9. AKOMT Mitochondrion Akodon juninensis 1 1 401 ! 2640: 10. AKOMT Mitochondrion Akodon kofordi 1 1 401 ! 2641: 11. AKOMT Mitochondrion Akodon mollis 1 1 401 ! 2642: 12. AKOMT Mitochondrion Akodon puer 1 1 401 ! 2643: 13. AKOMT Mitochondrion Akodon subfuscus 3 3 1203 ! 2644: 14. AKOMT Mitochondrion Akodon torques 3 3 1203 ! 2645: 15. ALFCP Chloroplast Medicago sativa 3 3 3460 ! 2646: 16. AMDCP Chloroplast Acetabularia mediterranea 1 1 1175 ! 2647: 17. AMFMT Mitochondrion Apis mellifera 1 1 2949 ! 2648: 18. AMHCP Chloroplast Amaranthus hybridus 1 1 1187 ! 2649: 19. AMTMT Mitochondrion Ambystoma tigrinum 2 1 225 ! 2650: 20. ASIMT Mitochondrion Ascobolus immersus 2 1 5142 ! 2651: 21. ASNMT Mitochondrion Aspergillus amstelodami 1 1 624 ! 2652: 22. ASNMT Mitochondrion Aspergillus nidulans 22 18 32837 ! 2653: 23. ASTCP Chloroplast Avena sativa 1 1 1623 ! 2654: 24. ATHCP Chloroplast Arabidopsis thaliana 3 2 1499 ! 2655: 25. ATHMT Mitochondrion Arabidopsis thaliana 2 1 880 ! 2656: 26. ATPCP Chloroplast Atriplex patula 1 1 1786 ! 2657: 27. ATPCP Chloroplast Atriplex rosea 1 1 1790 ! 2658: 28. BETMT Mitochondrion Beta vulgaris 4 4 5919 ! 2659: 29. BLSMT Mitochondrion Boletus satanas 2 1 341 ! 2660: 30. BLYCP Chloroplast Hordeum vulgare 18 13 23006 ! 2661: 31. BNACP Chloroplast Brassica napus 1 1 1633 ! 2662: 32. BOLCP Chloroplast Brassica oleracea 1 1 543 ! 2663: 33. BOLMT Mitochondrion Brassica oleracea 1 1 549 ! 2664: 34. BOLMT Mitochondrion Brassica sp. 2 2 770 ! 2665: 35. BOMMT Mitochondrion Bolomys amoenus 2 2 802 ! 2666: 36. BOVMT Mitochondrion Bos taurus 6 5 19563 ! 2667: 37. CEUMT Mitochondrion Cervus unicolor 1 1 2682 ! 2668: 38. CHECP Chloroplast Chenopodium album 1 1 207 ! 2669: 39. CHKMT Mitochondrion Gallus domesticus 1 1 3571 ! 2670: 40. CHKMT Mitochondrion Gallus gallus 4 3 1153 ! 2671: 41. CHLCP Chloroplast Chlorella ellipsoidea 12 9 15063 ! 2672: 42. CHPMT Mitochondrion Pan troglodytes 1 1 896 ! 2673: 43. CNAMT Mitochondrion Citrullus lanatus 1 1 4512 ! 2674: 44. COCMT Mitochondrion Cochliobolus heterostrophus 1 1 1827 ! 2675: 45. CODCP Chloroplast Codium fragile 4 4 304 ! 2676: 46. COOCP Chloroplast Coleochaete orbicularis 1 1 1587 ! 2677: 47. CPACP Chloroplast Cyanophora paradoxa 11 8 2748 ! 2678: 48. CPACY Cyanelle Cyanophora paradoxa 5 5 5317 ! 2679: 49. CRECP Chloroplast Chlamydomonas moewusii 3 2 8107 ! 2680: 50. CRECP Chloroplast Chlamydomonas reinhardtii 42 33 37766 ! 2681: 51. CRECP Chloroplast Chlamydomonas sp. 3 2 2346 ! 2682: 52. CREMT Mitochondrion Chlamydomonas reinhardtii 26 22 21535 ! 2683: 53. CRRMT Mitochondrion Corcorax melanorhamphos 1 1 239 ! 2684: 54. CRYCP Chloroplast Cryptomonas phi 2 1 715 ! 2685: 55. DARMT Mitochondrion Daucus carota 1 1 690 ! 2686: 56. DIPMT Mitochondrion Dipodomys californicus 1 1 239 ! 2687: 57. DIPMT Mitochondrion Dipodomys heermanni 1 1 239 ! 2688: 58. DIPMT Mitochondrion Dipodomys panamintinus 2 2 478 ! 2689: 59. DRMMT Mitochondrion Drosophila mauritania 1 1 976 ! 2690: 60. DROMT Mitochondrion Drosophila melanogaster 9 6 16133 ! 2691: 61. DRSMT Mitochondrion Drosophila simulans 1 1 975 ! 2692: 62. DRVMT Mitochondrion Drosophila virilis 1 1 191 ! 2693: 63. DRYMT Mitochondrion Drosophila yakuba 9 3 19938 ! 2694: 64. EGRCP Chloroplast Euglena gracilis 35 24 62419 ! 2695: 65. EQQMT Mitochondrion Equus quagga 2 2 229 ! 2696: 66. FHEMT Mitochondrion Fasciola hepatica 2 1 708 ! 2697: 67. FRGMT Mitochondrion Rana catesbeiana 9 5 12109 ! 2698: 68. FSBMT Mitochondrion Acipenser transmontano 2 1 156 ! 2699: 69. FSBMT Mitochondrion Cichlosoma centrarchus 1 1 239 ! 2700: 70. FSBMT Mitochondrion Cichlosoma citrinellum 1 1 239 ! 2701: 71. FSBMT Mitochondrion Cichlosoma labiatum 1 1 239 ! 2702: 72. FSBMT Mitochondrion Cichlosoma nicaraguense 1 1 239 ! 2703: 73. FSBMT Mitochondrion Cyprinus carpio 3 3 873 ! 2704: 74. FSBMT Mitochondrion Julidochromis regani 1 1 239 ! 2705: 75. FSBMT Mitochondrion Salmo gairdneri 2 2 855 ! 2706: 76. FTRCP Chloroplast Flaveria bidentis 1 1 1839 ! 2707: 77. FTRCP Chloroplast Flaveria pringlei 1 1 1842 ! 2708: 78. GCOCP Chloroplast Gracilaria tenuistipitata 1 1 1930 ! 2709: 79. GIBMT Mitochondrion Hylobates lar 1 1 896 ! 2710: 80. GORMT Mitochondrion Gorilla gorilla 1 1 896 ! 2711: 81. HAMMT Mitochondrion Cricetulus sp. 1 1 880 ! 2712: 82. HNNMT Mitochondrion Helianthus annuus 1 1 1336 ! 2713: 83. HUMMT Mitochondrion Homo sapiens 43 36 37585 ! 2714: 84. HYRMT Mitochondrion Hydropotes inermis 1 1 2680 ! 2715: 85. IPBCP Chloroplast Ipomoea batatas 1 1 2004 ! 2716: 86. LEIKP Kinetoplast Leishmania aethiopica 1 1 376 ! 2717: 87. LEIKP Kinetoplast Leishmania major 2 1 1031 ! 2718: 88. LEIKP Kinetoplast Leishmania mexicana 3 3 2134 ! 2719: 89. LEIKP Kinetoplast Leishmania tarentolae 22 16 28301 ! 2720: 90. LEIMT Mitochondrion Leishmania tarentolae 1 1 189 ! 2721: 91. LEMMT Mitochondrion Lemur catta 1 1 895 ! 2722: 92. LIGCP Chloroplast Ligularia calthifolia 1 1 103 ! 2723: 93. LMIMT Mitochondrion Locusta migratoria 3 3 5118 ! 2724: 94. LUAMT Mitochondrion Lupinus angustifolius 2 2 1330 ! 2725: 95. LUPMT Mitochondrion Lupinus luteus 2 1 630 ! 2726: 96. MACMT Mitochondrion Macaca fascicularis 2 2 1598 ! 2727: 97. MACMT Mitochondrion Macaca fuscata 1 1 896 ! 2728: 98. MACMT Mitochondrion Macaca mulatta 1 1 896 ! 2729: 99. MACMT Mitochondrion Macaca sylvanus 1 1 896 ! 2730: 100. MCXMT Mitochondrion Microxus mimus 2 2 802 ! 2731: 101. MMUMT Mitochondrion Muntiacus reevesi 1 1 2682 ! 2732: 102. MPOCP Chloroplast Marchantia polymorpha 10 1 121024 ! 2733: 103. MSQMT Mitochondrion Aedes albopictus 9 9 3448 ! 2734: 104. MUSMT Mitochondrion Mus musculus 22 15 20678 ! 2735: 105. MZECP Chloroplast Zea mays 72 55 54150 ! 2736: 106. MZECP Chloroplast Zea perennis 2 2 1456 ! 2737: 107. MZEMT Mitochondrion Zea mays 53 45 80743 ! 2738: 108. NEUMT Mitochondrion Neurospora crassa 44 39 55773 ! 2739: 109. NEUMT Mitochondrion Neurospora intermedia 5 4 10804 ! 2740: 110. NRACP Chloroplast Neurachne munroi 1 1 1990 ! 2741: 111. NRACP Chloroplast Neurachne tenuifolia 1 1 2010 ! 2742: 112. OBECP Chloroplast Oenothera berteriana 6 4 1813 ! 2743: 113. OBEMT Mitochondrion Oenothera berteriana 18 15 25036 ! 2744: 114. OBOCP Chloroplast Oenothera odorata 2 2 964 ! 2745: 115. ODOMT Mitochondrion Odocoileus virginianus 1 1 2677 ! 2746: 116. OHOCP Chloroplast Oenothera hookeri 2 2 2132 ! 2747: 117. OLICP Chloroplast Olisthodiscus luteus 1 1 714 ! 2748: 118. ORAMT Mitochondrion Pongo pygmaeus 1 1 895 ! 2749: 119. OSPMT Mitochondrion Oenothera sp. 2 2 1635 ! 2750: 120. PALMT Mitochondrion Paracentrotus lividus 17 17 21974 ! 2751: 121. PANMT Mitochondrion Podospora anserina 21 20 65750 ! 2752: 122. PARMT Mitochondrion Paramecium aurelia 9 9 8110 ! 2753: 123. PARMT Mitochondrion Paramecium primaurelia 4 3 5645 ! 2754: 124. PARMT Mitochondrion Paramecium sp. 34 17 12563 ! 2755: 125. PARMT Mitochondrion Paramecium tetraurelia 4 4 5844 ! 2756: 126. PEACP Chloroplast Pisum sativum 36 30 55118 ! 2757: 127. PEAMT Mitochondrion Pisum sativum 8 6 10694 ! 2758: 128. PENCP Chloroplast Pennisetum americanum 2 1 325 ! 2759: 129. PETCP Chloroplast Petunia hybrida 7 7 5806 ! 2760: 130. PETMT Mitochondrion Petunia hybrida 4 3 2954 ! 2761: 131. PETMT Mitochondrion Petunia parodii 1 1 1774 ! 2762: 132. PFAMT Mitochondrion Plasmodium falciparum 1 1 935 ! 2763: 133. PGYMT Mitochondrion Paragyrodon sphaerosporus 2 1 337 ! 2764: 134. PHVMT Mitochondrion Phaseolus vulgaris 1 1 88 ! 2765: 135. PIGMT Mitochondrion Sus scrofa 2 2 686 ! 2766: 136. PILCP Chloroplast Pilayella littoralis 1 1 353 ! 2767: 137. PMGMT Mitochondrion Placopecten magellanicus 5 5 4580 ! 2768: 138. POGMT Mitochondrion Thomomys townsendi 1 1 239 ! 2769: 139. PZOCP Chloroplast Pelargonium zonale 2 2 463 ! 2770: 140. RADMT Mitochondrion Raphanus sativus 2 2 5752 ! 2771: 141. RATMT Mitochondrion Rattus norvegicus 35 26 23507 ! 2772: 142. RATMT Mitochondrion Rattus rattus 4 4 4388 ! 2773: 143. RHS Mitochondrion Rhizopogon achraeceorubens 2 1 341 ! 2774: 144. RHS Mitochondrion Rhizopogon subcaerulescens 2 1 341 ! 2775: 145. RICCP Chloroplast Oryza sativa 11 9 12553 ! 2776: 146. RICMT Mitochondrion Oryza sativa 5 5 8084 ! 2777: 147. RYECP Chloroplast Secale cereale 9 7 9269 ! 2778: 148. SAIMT Mitochondrion Saimiri sciureus 1 1 893 ! 2779: 149. SALCP Chloroplast Sinapis alba 8 6 9874 ! 2780: 150. SAOCP Chloroplast Saponaria officinalis 1 1 1252 ! 2781: 151. SCOMT Mitochondrion Schizophyllum commune 1 1 1120 ! 2782: 152. SLMMT Mitochondrion Physarum polycephalum 1 1 1536 ! 2783: 153. SNICP Chloroplast Solanum nigrum 1 1 1501 ! 2784: 154. SOLCP Chloroplast Spirodela oligorhiza 9 9 6538 ! 2785: 155. SOYCP Chloroplast Glycine max 14 9 16045 ! 2786: 156. SOYMT Mitochondrion Glycine max 5 5 8683 ! 2787: 157. SPFMT Mitochondrion Spodoptera frugiperda 1 1 446 ! 2788: 158. SPICP Chloroplast Spinacia oleracea 47 38 79017 ! 2789: 159. SRGCP Chloroplast Sorghum bicolor 1 1 862 ! 2790: 160. SRGMT Mitochondrion Sorghum sp. 4 2 4768 ! 2791: 161. STFMT Mitochondrion Asterina pectinifera 1 1 3849 ! 2792: 162. SUIMT Mitochondrion Suillus cavipes 2 1 339 ! 2793: 163. SUSMT Mitochondrion Strongylocentrotus drobachiensis ! 2794: 2 2 965 ! 2795: 164. SUSMT Mitochondrion Strongylocentrotus franciscanus ! 2796: 3 3 1276 ! 2797: 165. SUSMT Mitochondrion Strongylocentrotus intermedius ! 2798: 2 2 960 ! 2799: 166. SUSMT Mitochondrion Strongylocentrotus pallidus 2 2 961 ! 2800: 167. SUSMT Mitochondrion Strongylocentrotus purpuratus ! 2801: 5 4 16929 ! 2802: 168. TARMT Mitochondrion Tarsius syrichta 1 1 895 ! 2803: 169. TETMT Mitochondrion Tetrahymena thermophila 1 1 53 ! 2804: 170. TEYMT Mitochondrion Tetrahymena pyriformis 14 13 12462 ! 2805: 171. TOBCP Chloroplast Nicotiana acuminata 1 1 2052 ! 2806: 172. TOBCP Chloroplast Nicotiana debneyi 3 3 4016 ! 2807: 173. TOBCP Chloroplast Nicotiana otophora 1 1 2052 ! 2808: 174. TOBCP Chloroplast Nicotiana plumbaginifolia 6 4 4169 ! 2809: 175. TOBCP Chloroplast Nicotiana tabacum 47 40 200231 ! 2810: 176. TOBMT Mitochondrion Nicotiana plumbaginifolia 2 1 1740 ! 2811: 177. TOBMT Mitochondrion Nicotiana tabacum 4 3 4074 ! 2812: 178. TOMCP Chloroplast Lycopersicon esculentum 1 1 103 ! 2813: 179. TOMMT Mitochondrion Lycopersicon esculentum 2 1 558 ! 2814: 180. TRBKP Kinetoplast Trypanosoma brucei 27 21 37228 ! 2815: 181. TRBMT Mitochondrion Trypanosoma brucei 4 4 2285 ! 2816: 182. TRCKP Kinetoplast Trypanosoma cruzi 27 27 11864 ! 2817: 183. TREKP Kinetoplast Trypanosoma equiperdum 2 2 2017 ! 2818: 184. TREKP Kinetoplast Trypanosoma evansi 3 2 1998 ! 2819: 185. TRFKP Kinetoplast Crithidia fasciculata 19 18 12549 ! 2820: 186. TRFKP Kinetoplast Crithidia oncopelti 6 3 1231 ! 2821: 187. TRFMT Mitochondrion Crithidia fasciculata 2 1 2034 ! 2822: 188. TRFMT Mitochondrion Crithidia oncopelti 1 1 149 ! 2823: 189. TRLKP Kinetoplast Leptomonas sp. 1 1 2568 ! 2824: 190. TRWKP Kinetoplast Trypanosoma lewisi 2 2 2036 ! 2825: 191. VFACP Chloroplast Vicia faba 6 6 9547 ! 2826: 192. VFAMT Mitochondrion Vicia faba 4 4 9356 ! 2827: 193. WARMT Mitochondrion Pomatostomus isidori 1 1 239 ! 2828: 194. WARMT Mitochondrion Pomatostomus ruficeps 1 1 239 ! 2829: 195. WARMT Mitochondrion Pomatostomus superciliosus 1 1 239 ! 2830: 196. WARMT Mitochondrion Pomatostomus temporalis 1 1 239 ! 2831: 197. WHTCP Chloroplast Triticum aestivum 28 26 26229 ! 2832: 198. WHTMT Mitochondrion Triticum aestivum 33 24 28296 ! 2833: 199. XELMT Mitochondrion Xenopus laevis 6 5 25196 ! 2834: 200. XERMT Mitochondrion Xerocomus chrysenteron 2 1 339 ! 2835: 201. YSCMT Mitochondrion Saccharomyces cerevisiae 191 171 142613 ! 2836: 202. YSGMT Mitochondrion Saccharomyces carlsbergensis ! 2837: 1 1 149 ! 2838: 203. YSKMT Mitochondrion Kluyveromyces lactis 78 39 3699 ! 2839: 204. YSKMT Mitochondrion Kluyveromyces thermotolerans ! 2840: 5 3 1287 ! 2841: 205. YSLMT Mitochondrion Torulopsis glabrata 10 9 6200 ! 2842: 206. YSPMT Mitochondrion Schizosaccharomyces pombe 10 9 13361 ! 2843: 207. YSSMT Mitochondrion Cephalosporium acremonium 2 2 3029 ! 2844: 208. YSTMT Mitochondrion Yeast sp. 4 4 5196 ! 2845: 209. YSUMT Mitochondrion Candida utilis 1 1 306 ! 2846: 210. YSVMT Mitochondrion Saccharomyces uvarum 3 3 2296 ! 2847: ! 2848: Total 1569 1271 1848854 ! 2849: ! 2850: BACTERIAL ! 2851: ! 2852: Key Name Reports Entries Bases ! 2853: ------------------------------------------------------------------------------- ! 2854: 1. ABC Acetobacter aceti 1 1 1624 ! 2855: 2. ABC Acetobacter xylinum 1 1 9540 ! 2856: 3. AC2 Plasmid pAC27 1 1 803 ! 2857: 4. ACC Acinetobacter calcoaceticus 13 10 27286 ! 2858: 5. ACC Acinetobacter sp. 4 3 5193 ! 2859: 6. ACH Achromobacter sp. 1 1 2414 ! 2860: 7. ACL Acholeplasma laidlawii 3 2 1858 ! 2861: 8. ACN Actinobacillus actinomycetemcomitans 1 1 3842 ! 2862: 9. ACN Actinobacillus pleuropneumoniae 1 1 3831 ! 2863: 10. ACO Acetogenium kivui 1 1 2477 ! 2864: 11. ACY Actinomyces naeslundii 1 1 2160 ! 2865: 12. ACY Actinomyces viscosus 2 1 1850 ! 2866: 13. AER Aeromicrobium erythreus 1 1 1463 ! 2867: 14. AFA Alcaligenes eutrophus 9 9 23911 ! 2868: 15. AFA Alcaligenes faecalis 4 4 8591 ! 2869: 16. AFA Plasmid pJP4 7 5 11105 ! 2870: 17. AHA Aphanocapsa sp. 1 1 1920 ! 2871: 18. AMC Acidaminococcus fermentans 2 1 3245 ! 2872: 19. AMS Ampullariella sp. 1 1 1892 ! 2873: 20. ANA Anabaena 7120 8 6 15235 ! 2874: 21. ANA Anabaena sp. 27 19 26386 ! 2875: 22. ANI Anacystis nidulans 32 26 36901 ! 2876: 23. ANN Actinoplanes missouriensis 2 1 1639 ! 2877: 24. APM Anaplasma marginale 5 4 11487 ! 2878: 25. AQU Agmenellum quadruplicatum 3 3 5497 ! 2879: 26. ARF Archaeoglobus fulgidus 3 2 1727 ! 2880: 27. ARG Arthrobacter sp. 1 1 2075 ! 2881: 28. ATU Agrobacterium rhizogenes 8 6 14645 ! 2882: 29. ATU Agrobacterium sp. 1 1 1599 ! 2883: 30. ATU Agrobacterium tumefaciens 38 31 62767 ! 2884: 31. AVH Azotobacter chroococcum 1 1 1654 ! 2885: 32. AVI Azotobacter vinelandii 24 20 80709 ! 2886: 33. AZS Azospirillum brasilense 1 1 1910 ! 2887: 34. BAD Bacillus caldolyticus 1 1 1147 ! 2888: 35. BAL Bacillus caldotenax 5 5 5550 ! 2889: 36. BAM Bacillus amyloliquefaciens 19 16 17715 ! 2890: 37. BAN Bacillus anthracis 4 4 14401 ! 2891: 38. BBR Bacillus brevis 11 10 25879 ! 2892: 39. BC1 Plasmid pBC16 1 1 257 ! 2893: 40. BCC Bacillus coagulans 2 2 2433 ! 2894: 41. BCE Bacillus cereus 18 14 17016 ! 2895: 42. BCI Bacillus circulans 9 6 12823 ! 2896: 43. BCQ Bacillus Q 5 5 786 ! 2897: 44. BFI Bacillus firmus 1 1 1434 ! 2898: 45. BIF Bifidobacterium longum 1 1 1767 ! 2899: 46. BLI Bacillus licheniformis 21 18 19815 ! 2900: 47. BLL Bacillus lautus 1 1 2323 ! 2901: 48. BMA Bacillus macerans 1 1 2744 ! 2902: 49. BME Bacillus megaterium 24 19 31050 ! 2903: 50. BNG Bacteroides gingivalis 1 1 1420 ! 2904: 51. BNO Bacteroides nodosus 6 5 4828 ! 2905: 52. BNR Bacteroides fragilis 6 5 8556 ! 2906: 53. BOR Borrelia burgdorferei 7 6 3181 ! 2907: 54. BPE Bordetella bronchiseptica 1 1 4936 ! 2908: 55. BPE Bordetella parapertussis 3 3 4749 ! 2909: 56. BPE Bordetella pertussis 21 15 42985 ! 2910: 57. BPO Bacillus polymyxa 4 3 8764 ! 2911: 58. BPU Bacillus pumilus 12 9 8915 ! 2912: 59. BRL Brevibacterium epidermidis 2 1 1721 ! 2913: 60. BRL Brevibacterium lactofermentum 9 8 22049 ! 2914: 61. BRU Brucella abortus 2 2 5253 ! 2915: 62. BS2 Plasmid pBS2 1 1 2279 ! 2916: 63. BSN Bacillus natto 1 1 676 ! 2917: 64. BSP Bacillus sp. 22 21 48210 ! 2918: 65. BSS Bacillus sphaericus 16 12 30172 ! 2919: 66. BST Bacillus stearothermophilus 41 39 62425 ! 2920: 67. BSU Bacillus subtilis 274 216 357850 ! 2921: 68. BTH Bacillus thuringiensis 67 52 149803 ! 2922: 69. BTT Thermoactinomyces thalpophilus 2 2 1036 ! 2923: 70. BUT Butyrivibrio fibrisolvens 2 2 4411 ! 2924: 71. C11 Plasmid pColBM-C1139 1 1 2149 ! 2925: 72. C1B Plasmid Colicin B4 3 3 1561 ! 2926: 73. CAJ Campylobacter coli 3 3 4985 ! 2927: 74. CAJ Campylobacter fetus 1 1 3974 ! 2928: 75. CAJ Campylobacter jejuni 4 4 5410 ! 2929: 76. CB2 Plasmid Colicin B2 1 1 360 ! 2930: 77. CCR Caulobacter crescentus 24 24 15105 ! 2931: 78. CD1 Plasmid Colicin D 1 1 1099 ! 2932: 79. CDC Caldocellum saccharolyticum 6 5 16338 ! 2933: 80. CE1 Plasmid Colicin E1 42 31 17722 ! 2934: 81. CE2 Plasmid Colicin E2 5 5 4629 ! 2935: 82. CE3 Plasmid Colicin E3 1 1 392 ! 2936: 83. CE5 Plasmid Colicin E5-099 2 2 2401 ! 2937: 84. CE8 Plasmid Colicin E8 1 1 1268 ! 2938: 85. CE9 Plasmid Colicin E9 2 2 2148 ! 2939: 86. CEC Plasmid Colicin E3-CA38 8 3 4883 ! 2940: 87. CEC Plasmid Colicin E6-CT14 2 2 4675 ! 2941: 88. CFI Cellulomonas fimi 7 7 5787 ! 2942: 89. CFI Cellulomonas uda 1 1 1828 ! 2943: 90. CFR Citrobacter freundii 6 5 4522 ! 2944: 91. CFX Chloroflexus aurantiacus 4 3 3568 ! 2945: 92. CGF Chlorogloeopsis fritschii 1 1 210 ! 2946: 93. CH1 Plasmid pCHL1 2 2 8101 ! 2947: 94. CHT Chlamydia psittaci 5 5 6932 ! 2948: 95. CHT Chlamydia trachomatis 36 22 61362 ! 2949: 96. CIA Plasmid Colicin Ia 1 1 3727 ! 2950: 97. CIB Plasmid Colicin Ib 5 5 10934 ! 2951: 98. CIB Plasmid Colicin Ib-P9 2 2 2373 ! 2952: 99. CLA Plasmid Colicin A 4 4 3950 ! 2953: 100. CLD Plasmid CloDF13 13 1 9957 ! 2954: 101. CLK Plasmid Colicin K 2 2 815 ! 2955: 102. CLN Plasmid Colicin V 1 1 412 ! 2956: 103. CLN Plasmid Colicin V-K30 1 1 1465 ! 2957: 104. CLN2 Plasmid Colicin V2-K94 1 1 550 ! 2958: 105. CLO Clostridium acetobutylicum 9 7 14479 ! 2959: 106. CLO Clostridium acidiurici 1 1 2266 ! 2960: 107. CLO Clostridium botulinum 1 1 4835 ! 2961: 108. CLO Clostridium cellulolyticum 1 1 2405 ! 2962: 109. CLO Clostridium difficile 4 3 10451 ! 2963: 110. CLO Clostridium innocuum 1 1 1544 ! 2964: 111. CLO Clostridium pasteurianum 25 17 18163 ! 2965: 112. CLO Clostridium perfringens 10 9 7118 ! 2966: 113. CLO Clostridium sordellii 1 1 1504 ! 2967: 114. CLO Clostridium tetani 3 3 10529 ! 2968: 115. CLO Clostridium thermoaceticum 1 1 1965 ! 2969: 116. CLO Clostridium thermocellum 10 8 16656 ! 2970: 117. CLO Clostridium thermohydrosulfuricum 1 1 4839 ! 2971: 118. CLO Clostridium thermosulfurogenes 2 2 4258 ! 2972: 119. CLT Calothrix sp. 12 12 1936 ! 2973: 120. CLV Plasmid ColVBtrp 1 1 441 ! 2974: 121. CN2 Plasmid pCN2 1 1 117 ! 2975: 122. CN3 Plasmid pCN3 1 1 114 ! 2976: 123. COR Corynebacterium diphtheriae 2 1 2529 ! 2977: 124. COR Corynebacterium glutamicum 9 6 16234 ! 2978: 125. COR Corynebacterium nephridii 1 1 615 ! 2979: 126. COR Corynebacterium sp. 2 2 2512 ! 2980: 127. COX Coxiella burnetii 3 3 5956 ! 2981: 128. CPC Cryptococcus albidus 2 1 2984 ! 2982: 129. CPC Cryptococcus neoformans 1 1 2029 ! 2983: 130. CYA Cyanobacterium nostoc 2 2 4220 ! 2984: 131. CYT Cytophaga lytica 1 1 1509 ! 2985: 132. DCG Dictyoglomus thermophilum 3 3 6900 ! 2986: 133. DEI Deinococcus radiodurans 2 2 4970 ! 2987: 134. DMO Desulfurococcus mobilis 7 7 9730 ! 2988: 135. DSB Desulfobacterium autotrophicum 1 1 1376 ! 2989: 136. DSB Desulfobacterium niacini 1 1 1375 ! 2990: 137. DSB Desulfobacterium vacuolatum 1 1 1383 ! 2991: 138. DSF Desulfococcus multivorans 1 1 1372 ! 2992: 139. DSI Desulfomicrobium baculatus 1 1 1379 ! 2993: 140. DSL Desulfomonas pigra 1 1 1381 ! 2994: 141. DSO Desulfotomaculum orientis 1 1 1402 ! 2995: 142. DSO Desulfotomaculum ruminis 1 1 1368 ! 2996: 143. DSP Desulfobacter curvatus 1 1 1396 ! 2997: 144. DSP Desulfobacter hydrogenophilus 1 1 1390 ! 2998: 145. DSP Desulfobacter latus 1 1 1373 ! 2999: 146. DSP Desulfobacter sp. 2 2 2869 ! 3000: 147. DSU Desulfobulbus propionicus 1 1 1371 ! 3001: 148. DSU Desulfobulbus sp. 1 1 1365 ! 3002: 149. DSV Desulfosarcina variabilis 1 1 1527 ! 3003: 150. DVU Desulfovibrio africanus 1 1 1382 ! 3004: 151. DVU Desulfovibrio baarsii 2 2 1589 ! 3005: 152. DVU Desulfovibrio baculatus 2 1 2589 ! 3006: 153. DVU Desulfovibrio desulfuricans 5 5 4678 ! 3007: 154. DVU Desulfovibrio fructosovorans 1 1 3180 ! 3008: 155. DVU Desulfovibrio gigas 2 2 4126 ! 3009: 156. DVU Desulfovibrio multispirans 1 1 186 ! 3010: 157. DVU Desulfovibrio salexigens 2 2 2107 ! 3011: 158. DVU Desulfovibrio sapovorans 1 1 1395 ! 3012: 159. DVU Desulfovibrio vulgaris 9 9 11185 ! 3013: 160. EAM Erwinia amylovora 2 2 1641 ! 3014: 161. ECA Erwinia carotovora 14 12 17877 ! 3015: 162. ECB Erwinia herbicola 1 1 4902 ! 3016: 163. ECH Erwinia chrysanthemi 19 13 27706 ! 3017: 164. ECO Escherichia coli 1716 1188 1848929 ! 3018: 165. ECO Escherichia fergusonii 1 1 3133 ! 3019: 166. ECO F sex factor plasmid 3 3 5370 ! 3020: 167. ECO Plasmid Colicin BM-Cl139 3 3 3707 ! 3021: 168. ECO Plasmid pCU1 1 1 2056 ! 3022: 169. ECO Plasmid pF166 1 1 2133 ! 3023: 170. EHP Ectothiorhodospira halophila 1 1 121 ! 3024: 171. EHR Ehrlichia risticii 2 1 1498 ! 3025: 172. EHV Ectothiorhodospira vacuolata 1 1 120 ! 3026: 173. ENC Enterococcus faecium 1 1 1900 ! 3027: 174. ENR Plasmid ENTR 2 2 1273 ! 3028: 175. ENS Plasmid ENT 1 1 866 ! 3029: 176. ENT Enterobacter aerogenes 6 6 5330 ! 3030: 177. ENT Enterobacter agglomerans 3 3 1272 ! 3031: 178. ENT Enterobacter cloacae 8 8 9262 ! 3032: 179. ETA Edwardsiella tarda 2 1 306 ! 3033: 180. EUB Eubacterium sp. 6 5 10586 ! 3034: 181. FA3 Plasmid pFA3 1 1 1597 ! 3035: 182. FDI Fremyella diplosiphon 26 20 29933 ! 3036: 183. FIB Fibrobacter succinogenes 2 2 3736 ! 3037: 184. FPL Plasmid F 30 23 37662 ! 3038: 185. FRA Frankia sp. 3 2 3758 ! 3039: 186. FRN Francisella tularensis 1 1 1233 ! 3040: 187. FVB Flavobacterium heparinum 1 1 1528 ! 3041: 188. FVB Flavobacterium okeanokoites 8 8 9873 ! 3042: 189. FVB Flavobacterium sp. 4 4 6028 ! 3043: 190. GS5 Plasmid pGS05 1 1 1357 ! 3044: 191. HAF Hafnia alvei 1 1 2961 ! 3045: 192. HAL Halobacterium cutirubrum 7 5 8712 ! 3046: 193. HAL Halobacterium halobium 36 26 45031 ! 3047: 194. HAL Halobacterium salinarium 1 1 606 ! 3048: 195. HAL Halobacterium sp. 14 13 22487 ! 3049: 196. HAL Haloferax volcanii 1 1 3566 ! 3050: 197. HCL Heliobacterium chlorum 1 1 1512 ! 3051: 198. HCU Halobacterium cutirubrum 2 1 3116 ! 3052: 199. HEC Helicobacter felis 3 2 2887 ! 3053: 200. HEC Helicobacter mustelae 2 1 1435 ! 3054: 201. HEH Haemophilus haemolyticus 2 2 3186 ! 3055: 202. HEI Haemophilus influenzae 96 41 17798 ! 3056: 203. HEP Haemophilus parainfluenza 5 5 853 ! 3057: 204. HLF Haloferax sp. 4 3 1187 ! 3058: 205. HMO Halococcus morrhuae 2 2 4402 ! 3059: 206. HPT Herpetosiphon aurantiacus 1 1 1484 ! 3060: 207. HV2 Plasmid pHV2 1 1 6354 ! 3061: 208. IM13 Plasmid pIM13 1 1 2246 ! 3062: 209. INC Plasmid incB 1 1 352 ! 3063: 210. INC Plasmid incI-1 1 1 418 ! 3064: 211. INC Plasmid incI-gamma 1 1 417 ! 3065: 212. INS Insertion sequence 10 10 4266 ! 3066: 213. INS Insertion sequence IS1 5 4 3243 ! 3067: 214. INS Insertion sequence IS150 2 1 1443 ! 3068: 215. INS Insertion sequence IS186 2 2 2677 ! 3069: 216. INS Insertion sequence IS2 4 4 517 ! 3070: 217. INS Insertion sequence IS26 1 1 859 ! 3071: 218. INS Insertion sequence IS30 1 1 1221 ! 3072: 219. INS Insertion sequence IS4 1 1 1426 ! 3073: 220. INS Insertion sequence IS476 1 1 1225 ! 3074: 221. INS Insertion sequence IS493 1 1 1641 ! 3075: 222. INS Insertion sequence IS5 3 2 1570 ! 3076: 223. INS Insertion sequence IS891 1 1 1351 ! 3077: 224. INS Insertion sequence ISHS1 1 1 1449 ! 3078: 225. JD1 Plasmid pJD1 2 1 4207 ! 3079: 226. JS3 Plasmid pJS37 3 3 252 ! 3080: 227. KAE Klebsiella aerogenes 18 16 23367 ! 3081: 228. KCI Kluyvera citrophila 1 1 2734 ! 3082: 229. KPN Klebsiella pneumoniae 71 55 109716 ! 3083: 230. KPN Plasmid pJHC-MW1 1 1 1352 ! 3084: 231. KPO Klebsiella oxytoca 2 2 4901 ! 3085: 232. KY1 Plasmid pKY1 1 1 3022 ! 3086: 233. KYM Plasmid pKYM 1 1 2083 ! 3087: 234. LAC Lactococcus lactis 13 12 24807 ! 3088: 235. LAE Listonella ordalii 2 1 120 ! 3089: 236. LAE Listonella tubiashii 2 1 120 ! 3090: 237. LB1 Plasmid p1 1 1 533 ! 3091: 238. LB3 Lactobacillus 30a 3 2 2189 ! 3092: 239. LBA Lactobacillus acidophilus 1 1 400 ! 3093: 240. LBB Lactobacillus bulgaricus 1 1 536 ! 3094: 241. LBD Lactobacillus delbrueckii 7 4 5405 ! 3095: 242. LBH Lactobacillus helveticus 1 1 3292 ! 3096: 243. LBP Lactobacillus plantarum 3 2 3664 ! 3097: 244. LBP Plasmid pC30il 1 1 2140 ! 3098: 245. LBP Plasmid pLP1 1 1 2093 ! 3099: 246. LCA Lactobacillus casei 6 6 9787 ! 3100: 247. LCO Lactobacillus confusus 1 1 1320 ! 3101: 248. LEP Leptospira biflexa 2 2 4788 ! 3102: 249. LEP Leptospira interrogans 2 1 3244 ! 3103: 250. LIS Listeria monocytogenes 3 2 3940 ! 3104: 251. LM0 Plasmid pLM020 1 1 2330 ! 3105: 252. LPN Legionella pneumophila 2 2 2005 ! 3106: 253. LS1 Plasmid pLS11 1 1 253 ! 3107: 254. MBA Methanobacterium ivanovii 2 1 1353 ! 3108: 255. MBF Methanobacterium formicicum 1 1 3597 ! 3109: 256. MBH Methanobrevibacter smithii 3 3 7221 ! 3110: 257. MBI Methanobacterium thermoautotrophicum 10 7 26621 ! 3111: 258. MBI Plasmid pME2001 1 1 1440 ! 3112: 259. MBO Moraxella bovis 2 2 5044 ! 3113: 260. MBO Moraxella lacunata 1 1 969 ! 3114: 261. MBO Moraxella sp. 2 1 3034 ! 3115: 262. MCL Mastigocladus laminosus 1 1 1701 ! 3116: 263. MEC Micromonospora echinospora 1 1 398 ! 3117: 264. MEF Methanothermus fervidus 9 8 18721 ! 3118: 265. MEH Methanospirillum hungatei 1 1 295 ! 3119: 266. MEN Methanolobus tindarius 1 1 128 ! 3120: 267. MES Methanosarcina barkeri 5 3 13117 ! 3121: 268. MLC Methylococcus capsulatus 1 1 2463 ! 3122: 269. MLU Micrococcus luteus 10 9 19465 ! 3123: 270. MLY Micrococcus lysodeikticus 1 1 166 ! 3124: 271. MPL Mycoplasma-like organism 1 1 1535 ! 3125: 272. MSG Mycobacterium bovis 7 6 7320 ! 3126: 273. MSG Mycobacterium leprae 7 5 11027 ! 3127: 274. MSG Mycobacterium tuberculosis 15 9 18387 ! 3128: 275. MSG Plasmid pAL5000 1 1 4837 ! 3129: 276. MTB Methylobacterium extorquens 1 1 4500 ! 3130: 277. MTB Methylobacterium sp. 1 1 2791 ! 3131: 278. MTB Methylobacterium specialis 2 1 2211 ! 3132: 279. MTF Methylobacillus flagellatum 1 1 1349 ! 3133: 280. MV1 Plasmid pMV158 1 1 2436 ! 3134: 281. MVA Methanococcus vannielii 19 17 28753 ! 3135: 282. MVO Methanococcus voltae 11 10 15241 ! 3136: 283. MVT Methanococcus thermolithotrophicus 4 3 2820 ! 3137: 284. MXA Myxococcus xanthus 16 15 27127 ! 3138: 285. MXB Lysobacter enzymogenes 3 2 3218 ! 3139: 286. MYC Mycoplasma capricolum 14 13 21175 ! 3140: 287. MYC Mycoplasma hyopneumoniae 3 3 1928 ! 3141: 288. MYC Mycoplasma mycoides 4 4 2716 ! 3142: 289. MYC Mycoplasma sp. 41 37 51236 ! 3143: 290. MYC Plasmid pADB201 1 1 1717 ! 3144: 291. NAH Plasmid NAH7 (from P. putida) 6 5 3771 ! 3145: 292. NAT Natronobacterium pharaonis 1 1 1015 ! 3146: 293. NG2 Plasmid pNG2 1 1 1810 ! 3147: 294. NGO Neisseria flavescens 1 1 1228 ! 3148: 295. NGO Neisseria gonorrhoeae 63 55 50544 ! 3149: 296. NGO Neisseria meningitidis 12 8 9940 ! 3150: 297. NOC Nocardia mediterranei 3 3 450 ! 3151: 298. NOS Nostoc commune 1 1 4241 ! 3152: 299. NR1 Plasmid NR1 4 3 6463 ! 3153: 300. NT1 Plasmid NTP1 2 2 1440 ! 3154: 301. NT1 Plasmid NTP16 1 1 2730 ! 3155: 302. P15 Plasmid P15A 2 2 1226 ! 3156: 303. P18X Plasmid pACYC184 2 2 171 ! 3157: 304. P23 Plasmid pMM2-3 2 2 182 ! 3158: 305. P307 Plasmid P307 3 3 4629 ! 3159: 306. P53 Plasmid pMM5-3 4 4 429 ! 3160: 307. P55 Plasmid pMM5-5 4 4 420 ! 3161: 308. PAC Plasmid P177 1 1 345 ! 3162: 309. PAM Plasmid PAM177 1 1 1443 ! 3163: 310. PAS Pasteurella haemolytica 4 3 15958 ! 3164: 311. PAZ Plasmid pAZ1 1 1 808 ! 3165: 312. PB0 Plasmid pUB110 9 8 12606 ! 3166: 313. PB2 Plasmid pUB112 1 1 901 ! 3167: 314. PBF4 Plasmid pBF4 1 1 1041 ! 3168: 315. PBW Plasmid pBWH77 2 2 1623 ! 3169: 316. PC1 Plasmid pC194 2 2 3946 ! 3170: 317. PC2 Plasmid pC221 2 1 4555 ! 3171: 318. PDE Paracoccus denitrificans 10 7 17422 ! 3172: 319. PDG Plasmid pDGO100 2 2 3683 ! 3173: 320. PDU Plasmid pDU1358 2 2 5076 ! 3174: 321. PE1 Plasmid pE194 7 3 5039 ! 3175: 322. PE2 Plasmid pED208 2 2 5640 ! 3176: 323. PHL Plasmid pHly152 1 1 8215 ! 3177: 324. PI25 Plasmid pI258 5 4 12140 ! 3178: 325. PIJ Plasmid pIJ101 2 2 9188 ! 3179: 326. PIP Plasmid pIP401 2 2 383 ! 3180: 327. PIP Plasmid pIP630 1 1 1883 ! 3181: 328. PIP11 Plasmid pIP1100 1 1 1386 ! 3182: 329. PIP404 Plasmid pIP404 4 3 15188 ! 3183: 330. PJH Plasmid pJH1 1 1 1489 ! 3184: 331. PJM1 Plasmid pJM1 1 1 3581 ! 3185: 332. PJR Plasmid PJR225 1 1 1527 ! 3186: 333. PKL Plasmid pKLH1 1 1 160 ! 3187: 334. PKL Plasmid pKLH102 2 2 351 ! 3188: 335. PKL Plasmid pKLH104 1 1 131 ! 3189: 336. PKL Plasmid pKLH2 2 2 674 ! 3190: 337. PKL Plasmid pKLH201 1 1 153 ! 3191: 338. PKM Plasmid pKM101 1 1 1797 ! 3192: 339. PLB Plasmid pLB1 1 1 2190 ! 3193: 340. PLM Plasmid pAA3.7X 3 1 9583 ! 3194: 341. PLP Plasmid pSa 1 1 1447 ! 3195: 342. PME Plasmid pMEA100 1 1 150 ! 3196: 343. PMM Plasmid pMM110 1 1 240 ! 3197: 344. PMO Plasmid pMON234 1 1 997 ! 3198: 345. PNE Plasmid pNE131 2 1 2355 ! 3199: 346. PNS Plasmid pNS1 1 1 3879 ! 3200: 347. PNS Plasmid pNS1981 4 3 1819 ! 3201: 348. PO2 Plasmid pOAD2 2 2 2914 ! 3202: 349. PR1 Plasmid R1 13 10 7500 ! 3203: 350. PR2 Plasmid R1126 1 1 428 ! 3204: 351. PR6 Plasmid R6-5 2 1 858 ! 3205: 352. PRC Plasmid R 1 1 1487 ! 3206: 353. PRI Plasmid PRI13 2 1 2234 ! 3207: 354. PRM Morganella morganii 2 2 1831 ! 3208: 355. PRM Proteus mirabilis 7 6 16319 ! 3209: 356. PRM Proteus vulgaris 13 8 14186 ! 3210: 357. PRO Providencia sp. 1 1 1135 ! 3211: 358. PRO Providencia stuartii 1 1 3889 ! 3212: 359. PRS Propionibacterium shermanii 3 2 4951 ! 3213: 360. PS1 Streptomyces lividans plasmid pS1 1 1 75 ! 3214: 361. PSA Plasmid pSA2100 1 1 98 ! 3215: 362. PSC Plasmid pSC101 16 10 16807 ! 3216: 363. PSE Plasmid pCMS1 1 1 1322 ! 3217: 364. PSE Pseudomonas aeruginosa 99 77 110225 ! 3218: 365. PSE Pseudomonas amyloderamosa 5 2 4488 ! 3219: 366. PSE Pseudomonas cepacia 2 2 5867 ! 3220: 367. PSE Pseudomonas fluorescens 10 8 17694 ! 3221: 368. PSE Pseudomonas fragi 2 2 1682 ! 3222: 369. PSE Pseudomonas paucimobilis 1 1 1080 ! 3223: 370. PSE Pseudomonas pseudoalcaligenes 1 1 2040 ! 3224: 371. PSE Pseudomonas putida 28 26 68302 ! 3225: 372. PSE Pseudomonas sp. 25 22 39293 ! 3226: 373. PSE Pseudomonas syringae 11 10 27701 ! 3227: 374. PSE Pseudomonas testosteroni 2 2 2435 ! 3228: 375. PSE TOL Plasmid (from Pseudomonas putida) 11 7 9788 ! 3229: 376. PSE Zoogloea ramigera 1 1 1524 ! 3230: 377. PSM SYM megaplasmid(from R. meliloti) 9 8 5150 ! 3231: 378. PSN Plasmid pSN2 1 1 1288 ! 3232: 379. PT1 Plasmid pT181 7 4 5479 ! 3233: 380. PTB Plasmid pTB913 1 1 1200 ! 3234: 381. PWM Plasmid pWM5 1 1 569 ! 3235: 382. PWP Plasmid pWP7b 1 1 1370 ! 3236: 383. PWR Plasmid PWR60 1 1 4832 ! 3237: 384. PYR Pyrodictium occultum 4 4 2077 ! 3238: 385. PYW Pyrococcus woesi 2 1 124 ! 3239: 386. R10 Plasmid R100 25 17 26157 ! 3240: 387. R11 Plasmid R1162 5 5 2389 ! 3241: 388. R12 Plasmid R124 1 1 272 ! 3242: 389. R14 Plasmid R144 1 1 801 ! 3243: 390. R26 Plasmid R26 1 1 1541 ! 3244: 391. R27 Plasmid R27 1 1 1507 ! 3245: 392. R36 Plasmid R386 1 1 441 ! 3246: 393. R37 Plasmid R387 1 1 1160 ! 3247: 394. R38 Plasmid R388 2 2 3204 ! 3248: 395. R41 Plasmid R401 1 1 1857 ! 3249: 396. R45 Plasmid R485 1 1 591 ! 3250: 397. R46 Plasmid R46 3 3 2859 ! 3251: 398. R48 Plasmid R483 1 1 1618 ! 3252: 399. R53 Plasmid R538 3 2 1712 ! 3253: 400. R65 Plasmid R65 2 2 1380 ! 3254: 401. R67 Plasmid R67 1 1 293 ! 3255: 402. R6K Plasmid R6K 7 6 1894 ! 3256: 403. R75 Plasmid R751 4 4 1697 ! 3257: 404. R77 Plasmid R773 1 1 4347 ! 3258: 405. RA1 Plasmid RA1 1 1 758 ! 3259: 406. RBH Plasmid pRBH1 2 2 1521 ! 3260: 407. RBL Rhodopseudomonas acidophila 1 1 1491 ! 3261: 408. RBL Rhodopseudomonas blastica 1 1 12368 ! 3262: 409. RCA Rhodobacter capsulatus 32 26 52831 ! 3263: 410. RDC Rhodocyclus purpureus 1 1 1478 ! 3264: 411. REI Plasmid pRE-I 1 1 439 ! 3265: 412. RER Rhodococcus erythropolis 2 1 2070 ! 3266: 413. RER Rhodococcus fascians 2 1 121 ! 3267: 414. RGN Plasmid RGN238 2 1 2427 ! 3268: 415. RHA Azorhizobium caulinodans 4 2 3849 ! 3269: 416. RHB Bradyrhizobium japonicum 23 18 34554 ! 3270: 417. RHF Rhizobium fredii 1 1 2862 ! 3271: 418. RHH Rhizobium phaseoli 4 4 3681 ! 3272: 419. RHI Bradyrhizobium sp. 2 2 6665 ! 3273: 420. RHI Rhizobium sp. 8 7 10894 ! 3274: 421. RHJ Rhizobium japonicum 10 8 10225 ! 3275: 422. RHL Plasmid pRL1JI 5 1 12055 ! 3276: 423. RHL Rhizobium leguminosarum 13 13 19168 ! 3277: 424. RHM Rhizobium meliloti 52 45 93945 ! 3278: 425. RHR Rhizobium IRc78 2 2 2199 ! 3279: 426. RHT Rhizobium trifolii 5 5 6886 ! 3280: 427. RIA Plasmid Ri 1 1 21126 ! 3281: 428. RIR Rickettsia conorii 1 1 539 ! 3282: 429. RIR Rickettsia prowazekii 5 4 9706 ! 3283: 430. RIR Rickettsia rickettsii 4 4 8555 ! 3284: 431. RIR Rickettsia tsutsugamushi 2 2 5186 ! 3285: 432. RIR Rickettsia typhi 2 2 1067 ! 3286: 433. RIR Rochalimaea quintana 1 1 1493 ! 3287: 434. RK2 Plasmid RK2 10 7 9952 ! 3288: 435. RMV Rhodomicrobium vannielii 1 1 1484 ! 3289: 436. ROS Roseburia cecicola 1 1 1031 ! 3290: 437. RP1 Plasmid RP1 1 1 2709 ! 3291: 438. RP4 Plasmid RP4 5 5 2997 ! 3292: 439. RSF Plasmid RSF1010 7 7 10521 ! 3293: 440. RSP Rhodospirillum rubrum 11 11 21804 ! 3294: 441. RSS Rhodobacter sphaeroides 17 17 14217 ! 3295: 442. RTS Plasmid Rts1 2 1 1855 ! 3296: 443. RUA Ruminobacter amylophilus 2 1 2867 ! 3297: 444. RUM Ruminococcus albus 1 1 2180 ! 3298: 445. RVI Rhodopseudomonas viridis 5 4 3885 ! 3299: 446. SA2 Plasmid pSAM2 3 3 866 ! 3300: 447. SAC Sulfolobus acidocaldarius 6 5 15339 ! 3301: 448. SAU Stigmatella aurantiaca 2 1 1300 ! 3302: 449. SB2 Plasmid pSB24.2 2 2 7412 ! 3303: 450. SCP Plasmid SCP1 1 1 2513 ! 3304: 451. SE2 Plasmid pSE211 2 2 3017 ! 3305: 452. SER Saccharopolyspora erythraea 10 7 8075 ! 3306: 453. SHD Shigella dysenteriae 7 7 11010 ! 3307: 454. SHF Plasmid pMYSH6000 1 1 4472 ! 3308: 455. SHF Shigella flexneri 12 10 24401 ! 3309: 456. SHS Shigella sonnei 11 11 6738 ! 3310: 457. SLP1 Plasmid SLP1 3 3 630 ! 3311: 458. SMA Serratia marcescens 31 25 35311 ! 3312: 459. SMA Serratia sp. 1 1 2570 ! 3313: 460. SME Spiroplasma melliferum 1 1 1510 ! 3314: 461. SME Spiroplasma sp. 1 1 5025 ! 3315: 462. SMY Plasmid pSL2 1 1 345 ! 3316: 463. SMY1 Plasmid pSL1 2 2 633 ! 3317: 464. SPA Spirochaeta aurantia 1 1 1257 ! 3318: 465. SPO Sporolactobacillus laevis 1 1 118 ! 3319: 466. SPO Sporosarcina ureae 2 1 116 ! 3320: 467. SPU Spirulina platensis 1 1 5273 ! 3321: 468. SSO Sulfolobus shibatae 1 1 1495 ! 3322: 469. SSO Sulfolobus solfataricus 6 6 5873 ! 3323: 470. SSP Sulfolobus sp. 7 4 19617 ! 3324: 471. STA Plasmid pT48 1 1 2475 ! 3325: 472. STA Staphylococcus aureus 75 56 85940 ! 3326: 473. STA Staphylococcus carnosus 1 1 720 ! 3327: 474. STA Staphylococcus epidermidis 1 1 423 ! 3328: 475. STA Staphylococcus haemolyticus 1 1 1087 ! 3329: 476. STA Staphylococcus hyicus 1 1 2212 ! 3330: 477. STA Staphylococcus mutans 1 1 2288 ! 3331: 478. STA Staphylococcus simulans 1 1 1486 ! 3332: 479. STA Staphylococcus staphylolyticus 1 1 1825 ! 3333: 480. STM Streptomyces antibioticus 1 1 1567 ! 3334: 481. STM Streptomyces avidinii 1 1 638 ! 3335: 482. STM Streptomyces azureus 1 1 1521 ! 3336: 483. STM Streptomyces clavuligerus 6 4 5745 ! 3337: 484. STM Streptomyces coelicolor 15 12 17749 ! 3338: 485. STM Streptomyces fradiae 6 6 11455 ! 3339: 486. STM Streptomyces glaucescens 6 4 6431 ! 3340: 487. STM Streptomyces griseus 16 12 25048 ! 3341: 488. STM Streptomyces hygroscopicus 7 7 6374 ! 3342: 489. STM Streptomyces lavendulae 2 2 2078 ! 3343: 490. STM Streptomyces limosus 1 1 2291 ! 3344: 491. STM Streptomyces lividans 25 20 14900 ! 3345: 492. STM Streptomyces plicatus 2 2 1245 ! 3346: 493. STM Streptomyces rochei 4 4 2390 ! 3347: 494. STM Streptomyces sp. 47 39 49732 ! 3348: 495. STM Streptomyces thermotolerans 1 1 1260 ! 3349: 496. STM Streptomyces vinaceus 1 1 1119 ! 3350: 497. STR Plasmid pAM-beta-1 3 3 6001 ! 3351: 498. STR Plasmid pMK157 1 1 1920 ! 3352: 499. STR Streptococcus equisimilis 1 1 2568 ! 3353: 500. STR Streptococcus faecalis 6 6 8343 ! 3354: 501. STR Streptococcus lactis 8 7 8222 ! 3355: 502. STR Streptococcus mutans 15 13 46945 ! 3356: 503. STR Streptococcus pneumoniae 49 34 55746 ! 3357: 504. STR Streptococcus pyogenes 24 18 36619 ! 3358: 505. STR Streptococcus sanguis 3 3 8094 ! 3359: 506. STR Streptococcus sobrinus 1 1 4995 ! 3360: 507. STR Streptococcus sp. 17 14 31406 ! 3361: 508. STV Streptoverticillum sp. 1 1 1130 ! 3362: 509. STY Plasmid R1767 1 1 1519 ! 3363: 510. STY Plasmid R64 1 1 482 ! 3364: 511. STY Salmonella infantis 1 1 3430 ! 3365: 512. STY Salmonella potsdam 1 1 1727 ! 3366: 513. STY Salmonella rubislaw 1 1 1479 ! 3367: 514. STY Salmonella sp. 7 6 6050 ! 3368: 515. STY Salmonella typhimurium 174 142 204225 ! 3369: 516. SYC Synechocystis sp. 15 11 18768 ! 3370: 517. SYN Synechococcus sp. 15 15 38283 ! 3371: 518. TBA Thermophilic bacterium 6 3 11617 ! 3372: 519. TDT Trichodesmium thiebautii 1 1 357 ! 3373: 520. TFE Plasmid pTF-FC2 1 1 329 ! 3374: 521. TFE Thiobacillus acidophilus 9 4 599 ! 3375: 522. TFE Thiobacillus ferrooxidans 9 7 14624 ! 3376: 523. TFE Thiobacillus sp. 1 1 2172 ! 3377: 524. THA Thermoplasma acidophilum 3 3 7703 ! 3378: 525. THC Thermococcus celer 2 2 1312 ! 3379: 526. THF Thermomonospora fusca 1 1 264 ! 3380: 527. THP Thermofilum pendens 1 1 240 ! 3381: 528. THR Thermomicrobium roseum 1 1 1528 ! 3382: 529. TIP Plasmid pTiAch5 1 1 1164 ! 3383: 530. TIP Plasmid pTiAg162 1 1 420 ! 3384: 531. TIP Plasmid pTiB6S3 1 1 4203 ! 3385: 532. TIP Plasmid pTiC58 4 4 5214 ! 3386: 533. TIP Plasmid Ti (from A. tumefaciens) 61 52 120107 ! 3387: 534. TMO Thermotoga maritima 2 2 2763 ! 3388: 535. TRN Transposon gamma-delta 6 3 1092 ! 3389: 536. TRN Transposon Tn10 1 1 830 ! 3390: 537. TRN Transposon Tn21 1 1 1333 ! 3391: 538. TRN Transposon Tn2501 1 1 480 ! 3392: 539. TRN Transposon Tn3 2 2 389 ! 3393: 540. TRN Transposon Tn3411 2 1 2925 ! 3394: 541. TRN Transposon Tn4521 1 1 1315 ! 3395: 542. TRN Transposon Tn5 1 1 2040 ! 3396: 543. TRN Transposon Tn501 1 1 86 ! 3397: 544. TRN Transposon Tn602 4 4 639 ! 3398: 545. TRN10 Transposon Tn10 11 4 6024 ! 3399: 546. TRN15 Transposon Tn1525 1 1 1721 ! 3400: 547. TRN16 Transposon Tn1681 1 1 658 ! 3401: 548. TRN17 Transposon Tn1721 8 8 1797 ! 3402: 549. TRN1771 Transposon Tn1771 3 3 348 ! 3403: 550. TRN21 Transposon Tn21 4 4 6671 ! 3404: 551. TRN25 Transposon Tn2501 1 1 1539 ! 3405: 552. TRN26 Transposon Tn2680 1 1 194 ! 3406: 553. TRN3 Transposon Tn3 10 8 6351 ! 3407: 554. TRN34 Transposon Tn3411 1 1 1321 ! 3408: 555. TRN43 Transposon Tn4351 2 1 1982 ! 3409: 556. TRN431 Transposon Tn431 3 3 2405 ! 3410: 557. TRN4551 Transposon Tn4551 1 1 2080 ! 3411: 558. TRN4556 Transposon Tn4556 2 2 86 ! 3412: 559. TRN5 Transposon Tn5 9 6 4978 ! 3413: 560. TRN501 Transposon Tn501 4 4 7310 ! 3414: 561. TRN554 Transposon Tn554 5 1 6691 ! 3415: 562. TRN7 Transposon Tn7 7 7 7535 ! 3416: 563. TRN9 Transposon Tn9 2 2 1362 ! 3417: 564. TRN903 Transposon Tn903 6 6 6118 ! 3418: 565. TRN916 Transposon Tn916 1 1 1740 ! 3419: 566. TRN917 Transposon Tn917 3 3 6353 ! 3420: 567. TRNCAM Transposon Tn-Cam204 1 1 921 ! 3421: 568. TRP Treponema pallidum 7 6 8045 ! 3422: 569. TTE Thermoproteus tenax 8 8 4399 ! 3423: 570. TTH Thermus aquaticus 6 5 7004 ! 3424: 571. TTH Thermus caldophilus 1 1 1229 ! 3425: 572. TTH Thermus flavus 1 1 1771 ! 3426: 573. TTH Thermus thermophilus 23 15 28221 ! 3427: 574. TTV Thermoproteus tenax virus 1 2 1 13669 ! 3428: 575. URE Ureaplasma urealyticum 2 2 3982 ! 3429: 576. VCH Vibrio cholerae 17 15 18430 ! 3430: 577. VI1 Plasmid pVI150 1 1 972 ! 3431: 578. VIB Aeromonas hydrophila 7 6 7237 ! 3432: 579. VIB Aeromonas sobria 2 1 2510 ! 3433: 580. VIB Photobacterium leiognathi 5 4 10047 ! 3434: 581. VIB Photobacterium sp. 5 5 8715 ! 3435: 582. VIB Vibrio alginolyticus 5 4 12901 ! 3436: 583. VIB Vibrio anguillarum 1 1 4379 ! 3437: 584. VIB Vibrio fischeri 4 4 5791 ! 3438: 585. VIB Vibrio harveyi 12 11 14283 ! 3439: 586. VIB Vibrio parahaemolyticus 2 2 2861 ! 3440: 587. VIB Vibrio sp. 3 2 1390 ! 3441: 588. VIT Vitreoscilla sp. 2 1 689 ! 3442: 589. VIT Vitreoscilla stercoraria 1 1 745 ! 3443: 590. VVU Vibrio vulnificus 1 1 2237 ! 3444: 591. W10 Plasmid pWR100 2 1 4761 ! 3445: 592. WOL Wolinella succinogenes 1 1 91 ! 3446: 593. WP1 Plasmid pWP113a 1 1 1316 ! 3447: 594. WP1 Plasmid pWP116a 1 1 1336 ! 3448: 595. WP1 Plasmid pWP14a 1 1 1336 ! 3449: 596. XAA Xanthobacter autotrophicus 1 1 3041 ! 3450: 597. XAN Xanthomonas campestris 3 3 4683 ! 3451: 598. XEN Xenorhabdus luminescens 1 1 2553 ! 3452: 599. YEP Plasmid pYV03 2 1 3316 ! 3453: 600. YEP Yersinia bercovieri 2 2 257 ! 3454: 601. YEP Yersinia enterocolitica 26 24 18913 ! 3455: 602. YEP Yersinia pestis 4 4 4462 ! 3456: 603. YEP Yersinia pseudotuberculosis 10 8 15439 ! 3457: 604. ZMO Zymomonas mobilis 9 8 13565 ! 3458: ! 3459: Total 5528 4293 6992664 ! 3460: ! 3461: STRUCTURAL RNA ! 3462: ! 3463: Key Name Reports Entries Bases ! 3464: ------------------------------------------------------------------------------- ! 3465: 1. AAU Auricularia auricula-judae 1 1 118 ! 3466: 2. ABC Acetobacter sp. 2 2 236 ! 3467: 3. ACA Acanthamoeba castellanii 3 3 400 ! 3468: 4. ACC Acinetobacter calcoaceticus 2 2 1652 ! 3469: 5. ACH Achromobacter cycloclastes 1 1 120 ! 3470: 6. ACH Achromobacter xylosoxidans 1 1 114 ! 3471: 7. ACL Acholeplasma entomophilum 1 1 1476 ! 3472: 8. ACL Acholeplasma modicum 1 1 1473 ! 3473: 9. ACN Actinobacillus actinomycetemcomitans 3 3 494 ! 3474: 10. ACN Actinobacillus equuli 2 2 445 ! 3475: 11. ACN Actinobacillus hominis 3 3 494 ! 3476: 12. ACN Actinobacillus lignieresii 3 3 1931 ! 3477: 13. ACS Avian sarcoma virus 1 1 75 ! 3478: 14. ACY Actinomyces bovis 1 1 1368 ! 3479: 15. ACY Actinomyces israelii 2 2 1879 ! 3480: 16. ACY Actinomyces naeslundii 1 1 1378 ! 3481: 17. ACY Actinomyces odontolyticus 1 1 1359 ! 3482: 18. ACY Actinomyces pyogenes 2 1 1361 ! 3483: 19. ACY Actinomyces viscosus 1 1 1351 ! 3484: 20. AED Agaricus edulis 1 1 118 ! 3485: 21. AEQ Actinia equina 2 1 120 ! 3486: 22. AFA Alcaligenes eutrophus 1 1 1511 ! 3487: 23. AFA Alcaligenes faecalis 6 6 3410 ! 3488: 24. AKK Akkesiphycus lubricum 2 1 118 ! 3489: 25. ALF Medicago sativa 1 1 119 ! 3490: 26. ALL Asteroleplasma anaerobium 1 1 1471 ! 3491: 27. ALR Rous sarcoma virus 1 1 75 ! 3492: 28. AMG Acyrthosiphon magnoliae 2 2 281 ! 3493: 29. AMO Amoebidium parasiticum 1 1 119 ! 3494: 30. AMP Amoeba proteus 1 1 419 ! 3495: 31. ANC Ancylobacter aquaticus 1 1 117 ! 3496: 32. ANI Anacystis nidulans 4 4 371 ! 3497: 33. ANM Anisodoris nobilis 6 3 994 ! 3498: 34. ANP Anaeroplasma abactoclasticum 1 1 1453 ! 3499: 35. ANP Anaeroplasma bactoclasticum 1 1 1436 ! 3500: 36. ANP Anaeroplasma varium 1 1 1436 ! 3501: 37. APE Acremonium persicinum 1 1 119 ! 3502: 38. APL Aplysia kurodai 1 1 119 ! 3503: 39. APN Anthoceros punctatus 1 1 118 ! 3504: 40. APR Antheraea pernyi 1 1 120 ! 3505: 41. APU Aeromonas punctata 1 1 109 ! 3506: 42. AQU Agmenellum quadruplicatum 1 1 76 ! 3507: 43. ARB Arbacia punctulata 9 3 1049 ! 3508: 44. ARG Arthrobacter globiformis 4 3 1774 ! 3509: 45. ARG Arthrobacter luteus 1 1 122 ! 3510: 46. ARG Arthrobacter oxidans 2 1 121 ! 3511: 47. ARG Arthrobacter sp. 2 1 121 ! 3512: 48. ARN Argulus nobilis 1 1 1843 ! 3513: 49. ARO Arhodomonas oleiferhydrans 1 1 1487 ! 3514: 50. ARU Arundinaria gigantea 1 1 50 ! 3515: 51. ASC Acinetospora crinita 2 1 118 ! 3516: 52. ASE Aquaspirillum serpens 1 1 116 ! 3517: 53. ASF Aspergillus flavus 1 1 119 ! 3518: 54. ASG Aspergillus niger 1 1 119 ! 3519: 55. ASN Aspergillus nidulans 4 4 476 ! 3520: 56. AST Avena sativa 1 1 50 ! 3521: 57. ATT Atractiella solani 1 1 119 ! 3522: 58. ATU Agrobacterium tumefaciens 1 1 120 ! 3523: 59. AUT Aureobacterium testaceum 1 1 120 ! 3524: 60. AVI Azotobacter vinelandii 1 1 120 ! 3525: 61. AXY Amphibacillus xylanus 2 1 116 ! 3526: 62. BAC Bacillus acidocaldarius 1 1 117 ! 3527: 63. BAE Batrachospermum ectocarpum 1 1 121 ! 3528: 64. BAS Basidiobolus magnus 1 1 120 ! 3529: 65. BBR Bacillus brevis 2 2 1674 ! 3530: 66. BDE Bdellovibrio stolpii 1 1 1553 ! 3531: 67. BEG Beggiatoa alba 1 1 120 ! 3532: 68. BFI Bacillus firmus 1 1 116 ! 3533: 69. BGA Blue Green Algae 1 1 76 ! 3534: 70. BGL Bacillus globigii 1 1 116 ! 3535: 71. BHA Beneckea harveyi 1 1 122 ! 3536: 72. BJA Blepharisma japonicum 2 2 476 ! 3537: 73. BLI Bacillus licheniformis 1 1 116 ! 3538: 74. BLK Blakeslea trispora 1 1 120 ! 3539: 75. BLT Blastobacter viscosus 1 1 118 ! 3540: 76. BLY Hordeum vulgare 9 7 487 ! 3541: 77. BME Bacillus megaterium 1 1 116 ! 3542: 78. BMO Bombyx mori 14 13 1362 ! 3543: 79. BNA Brassica napus 2 2 196 ! 3544: 80. BNC Bacteroides asaccharolyticus 1 1 48 ! 3545: 81. BNG Bacteroides gingivalis 1 1 53 ! 3546: 82. BNI Bacteroides intermedius 1 1 52 ! 3547: 83. BNO Bacteroides nodosus 1 1 1532 ! 3548: 84. BOV Bos taurus 21 18 1426 ! 3549: 85. BPA Bacillus pasteurii 1 1 117 ! 3550: 86. BPL Brachionus plicatilis 1 1 121 ! 3551: 87. BRA Branchiostoma belcheri 1 1 120 ! 3552: 88. BRA Branchiostoma californiense 6 3 974 ! 3553: 89. BRL Brevibacterium helvolum 2 1 120 ! 3554: 90. BRL Brevibacterium linens 1 1 123 ! 3555: 91. BRP Brugia pahangi 1 1 363 ! 3556: 92. BRU Brucella abortus 2 1 1429 ! 3557: 93. BSI Blastocladiella simplex 1 1 118 ! 3558: 94. BST Bacillus stearothermophilus 10 10 845 ! 3559: 95. BSU Bacillus subtilis 16 14 1153 ! 3560: 96. BVO Bresslaua vorax 1 1 120 ! 3561: 97. BVU Beta vulgaris 1 1 120 ! 3562: 98. CAI Capniomyces stellatus 1 1 121 ! 3563: 99. CAO Carpopeltis crispata 1 1 121 ! 3564: 100. CAU Caulobacter spinosum 1 1 117 ! 3565: 101. CBC Caseobacter polymorphus 1 1 121 ! 3566: 102. CCI Coprinus cinereus 1 1 118 ! 3567: 103. CCO Crypthecodinium cohnii 4 4 492 ! 3568: 104. CDB Cardiobacterium hominis 1 1 1470 ! 3569: 105. CEL Caenorhabditis elegans 9 7 713 ! 3570: 106. CET Ceratobasidium cornigerum 1 1 118 ! 3571: 107. CFI Cellulomonas biazotea 1 1 120 ! 3572: 108. CHA Chaetopterus sp. 6 3 975 ! 3573: 109. CHB Chlorobium limicola 2 2 1615 ! 3574: 110. CHB Chlorobium phaeobacteroides 1 1 110 ! 3575: 111. CHF Chordaria flagelliformis 2 1 118 ! 3576: 112. CHH Chaetomorpha moniligera 1 1 120 ! 3577: 113. CHK Gallus gallus 25 23 2774 ! 3578: 114. CHL Chlorella pyrenoidosa 2 1 119 ! 3579: 115. CHL Chlorella sp. 5 3 2082 ! 3580: 116. CHO Chilomonas paramecium 1 1 124 ! 3581: 117. CHR Chromobacterium fluviatile 1 1 1473 ! 3582: 118. CHR Chromobacterium violaceum 1 1 1475 ! 3583: 119. CHS Christiansenia pallida 1 1 120 ! 3584: 120. CLL Callinectes sapidus 1 1 1861 ! 3585: 121. CLM Spisula solidissima 6 3 937 ! 3586: 122. CLO Clostridium aminovalericum 2 1 1554 ! 3587: 123. CLO Clostridium barkeri 2 1 1527 ! 3588: 124. CLO Clostridium bifermentans 1 1 117 ! 3589: 125. CLO Clostridium butyricum 2 2 234 ! 3590: 126. CLO Clostridium carnis 2 1 117 ! 3591: 127. CLO Clostridium pasteurianum 4 3 1745 ! 3592: 128. CLO Clostridium ramosum 1 1 1530 ! 3593: 129. CLO Clostridium sticklandii 2 2 1501 ! 3594: 130. CLO Clostridium tyrobutyricum 4 4 464 ! 3595: 131. COE Coemansia mojavensis 1 1 120 ! 3596: 132. COR Corynebacterium aquaticum 1 1 120 ! 3597: 133. COR Corynebacterium glutamicum 1 1 121 ! 3598: 134. COR Corynebacterium sp. 2 1 1366 ! 3599: 135. COR Corynebacterium xerosis 2 2 243 ! 3600: 136. COT Gossypium hirsutum 1 1 118 ! 3601: 137. COX Coxiella burnetii 2 1 1484 ! 3602: 138. CPA Cyanophora paradoxa 3 3 356 ! 3603: 139. CRA Coprinus radiatus 1 1 118 ! 3604: 140. CRB Limulus polyphemus 6 3 977 ! 3605: 141. CRE Chlamydomonas reinhardtii 3 3 399 ! 3606: 142. CRE Chlamydomonas sp. 1 1 118 ! 3607: 143. CRS Cryptochiton stelleri 6 3 923 ! 3608: 144. CTU Coleosporium tussilaginis 1 1 118 ! 3609: 145. CUN Cunninghamella elegans 1 1 120 ! 3610: 146. CUR Curtobacterium citreum 1 1 122 ! 3611: 147. CVN Chromatium vinosum 1 1 1526 ! 3612: 148. CYR Cycas revoluta 1 1 120 ! 3613: 149. CYT Cytophaga aquatilis 1 1 111 ! 3614: 150. CYT Cytophaga heparina 1 1 114 ! 3615: 151. CYT Cytophaga johnsonae 1 1 116 ! 3616: 152. DAC Dryopteris acuminata 1 1 121 ! 3617: 153. DDE Dacrymyces deliquescens 1 1 118 ! 3618: 154. DDI Dictyostelium discoideum 7 6 1170 ! 3619: 155. DIT Diatoma tenue 1 1 118 ! 3620: 156. DJA Dugesia japonica 1 1 120 ! 3621: 157. DJA Dugesia tigrina 6 3 962 ! 3622: 158. DOG Canis lupus 1 1 149 ! 3623: 159. DOG Canis sp. 2 2 191 ! 3624: 160. DPS Dipsacomyces acuminosporus 1 1 119 ! 3625: 161. DRO Drosophila melanogaster 42 36 5318 ! 3626: 162. DSA Desulfuromonas acetoxidans 1 1 1522 ! 3627: 163. DSM Desulfomonile tiedjei 1 1 1505 ! 3628: 164. DSP Desulfobacter postgatei 1 1 1519 ! 3629: 165. DSV Desulfosarcina variabilis 1 1 1527 ! 3630: 166. DUK Cairina moschata 1 1 78 ! 3631: 167. DVU Desulfovibrio vulgaris 1 1 120 ! 3632: 168. EAL Enchytraeus albidus 1 1 120 ! 3633: 169. EAR Equisetum arvense 2 1 120 ! 3634: 170. EBI Eisenia bicyclis 1 1 118 ! 3635: 171. ECO Escherichia coli 148 116 14668 ! 3636: 172. EFI Efibulobasidium albescens 1 1 118 ! 3637: 173. EGR Euglena gracilis 4 4 391 ! 3638: 174. EHP Ectothiorhodospira halophila 1 1 1494 ! 3639: 175. EIK Eikenella corrodens 4 4 5933 ! 3640: 176. EJA Entosphenus japonicus 2 2 241 ! 3641: 177. EMP Emplectonema gracile 2 2 239 ! 3642: 178. ERL Erythrobacter longus 1 1 119 ! 3643: 179. ERP Protomonas extorquens 1 1 116 ! 3644: 180. ERY Erysipelothrix rhusiopathiae 1 1 1487 ! 3645: 181. ESE Endophyllum sempervivi 1 1 118 ! 3646: 182. ESP Euphausia sperba 1 1 75 ! 3647: 183. EUT Eucidaris tribuloides 6 3 923 ! 3648: 184. EVA Exobasidium vaccinii 1 1 118 ! 3649: 185. EWO Euplotes woodruffi 1 1 120 ! 3650: 186. EXI Exidia glandulosa 1 1 118 ! 3651: 187. FAE Faenia rectivirgula 1 1 1246 ! 3652: 188. FBC Flexibacter sp. 1 1 117 ! 3653: 189. FSB Misgurnus fossilis 3 3 399 ! 3654: 190. FSB Oncorhynchus keta 1 1 75 ! 3655: 191. FSB Salmo gairdneri 2 2 282 ! 3656: 192. FSO Fusarium culmorum 2 2 387 ! 3657: 193. FSO Fusarium decemcellulare 6 6 1161 ! 3658: 194. FSO Fusarium graminearum 2 2 387 ! 3659: 195. FSO Fusarium javanicum 4 4 768 ! 3660: 196. FSO Fusarium moniliforme 6 6 1159 ! 3661: 197. FSO Fusarium nivale 2 2 384 ! 3662: 198. FSO Fusarium oxysporum 3 3 1010 ! 3663: 199. FSO Fusarium solani 4 4 767 ! 3664: 200. FVB Flavobacterium sp. 1 1 121 ! 3665: 201. GBI Ginkgo biloba 1 1 120 ! 3666: 202. GCL Gymnosporangium clavariaeforme 1 1 118 ! 3667: 203. GCO Gracilaria compressa 3 2 242 ! 3668: 204. GEA Gelidium amansii 2 2 241 ! 3669: 205. GEM Gemmata obscuriglobus 1 1 108 ! 3670: 206. GEN Genistelloides hibernus 1 1 122 ! 3671: 207. GLA Giardia lamblia 1 1 127 ! 3672: 208. GLC Gloiopeltis complanata 1 1 120 ! 3673: 209. GOL Golfingia gouldii 6 3 973 ! 3674: 210. GRA Graphiola phoenicis 1 1 118 ! 3675: 211. HAL Halobacterium volcanii 56 46 5074 ! 3676: 212. HAM Mesocricetus sp. 2 1 94 ! 3677: 213. HAP Halichondria panicea 1 1 120 ! 3678: 214. HAZ Haemophilus aphrophilus 3 3 494 ! 3679: 215. HCU Halobacterium cutirubrum 15 13 1050 ! 3680: 216. HDI Hymenolepis diminuta 2 2 215 ! 3681: 217. HEA Haemophilus aegypticus 1 1 116 ! 3682: 218. HEI Haemophilus influenzae 3 3 1917 ! 3683: 219. HJA Halichondria japonica 1 1 120 ! 3684: 220. HLF Haloferax mediterranei 2 1 123 ! 3685: 221. HMO Halococcus morrhuae 2 2 309 ! 3686: 222. HOC Haliclona oculata 1 1 120 ! 3687: 223. HPT Herpetosiphon aurantiacus 1 1 117 ! 3688: 224. HRO Halocynthia roretzi 2 1 119 ! 3689: 225. HSA Hymeniacidon sanguinea 2 2 276 ! 3690: 226. HUM Homo sapiens 51 45 6394 ! 3691: 227. HYD Hydra sp. 6 3 966 ! 3692: 228. HYF Hydrurus foetidus 1 1 118 ! 3693: 229. HYV Hyphomicrobium sp. 1 1 119 ! 3694: 230. HYV Hyphomicrobium vulgare 1 1 119 ! 3695: 231. IGU Iguana iguana 1 1 120 ! 3696: 232. ISO Isosphaera pallida 1 1 111 ! 3697: 233. JLA Aurelia aurita 2 2 240 ! 3698: 234. JLC Chrysaora quinquecirrha 1 1 120 ! 3699: 235. JLN Nemopsis dofleini 1 1 120 ! 3700: 236. JLS Spirocodon saltatrix 1 1 121 ! 3701: 237. KAB Kabatiella microsticta 1 1 120 ! 3702: 238. KIN Kingella denitrificans 1 1 1475 ! 3703: 239. KIN Kingella indologenes 1 1 1474 ! 3704: 240. KIN Kingella kingae 1 1 1476 ! 3705: 241. LAE Listonella aestuarianus 1 1 119 ! 3706: 242. LAN Lingula anatina 1 1 119 ! 3707: 243. LAN Lingula reevi 6 3 919 ! 3708: 244. LAP Lamprometra palmata 9 3 1044 ! 3709: 245. LBK Lactobacillus kandleri 2 1 1528 ! 3710: 246. LBM Lactobacillus minor 2 1 1524 ! 3711: 247. LBR Lactobacillus brevis 1 1 117 ! 3712: 248. LBT Lactobacillus halotolerans 2 1 1529 ! 3713: 249. LCA Lactobacillus casei 2 1 1574 ! 3714: 250. LCA Lactobacillus catenaforme 1 1 1549 ! 3715: 251. LCO Lactobacillus confusus 2 1 1525 ! 3716: 252. LEI Leishmania enriettii 1 1 68 ! 3717: 253. LEU Leuconostoc cremoris 2 1 1493 ! 3718: 254. LEU Leuconostoc lactis 2 1 1499 ! 3719: 255. LEU Leuconostoc mesenteroides 2 1 1554 ! 3720: 256. LEU Leuconostoc oenos 2 1 1510 ! 3721: 257. LEU Leuconostoc paramesenteroides 2 1 1524 ! 3722: 258. LGE Lineus geniculatus 1 1 120 ! 3723: 259. LHE Lophocolea heterophylla 1 1 119 ! 3724: 260. LND Linderina macrospora 1 1 119 ! 3725: 261. LPN Fluoribacter bozemanae 6 6 796 ! 3726: 262. LPN Fluoribacter dumoffii 6 6 825 ! 3727: 263. LPN Fluoribacter gormanii 3 3 385 ! 3728: 264. LPN Legionella pneumophila 11 10 1252 ! 3729: 265. LSY Leptosynapta inhaerens 6 3 1051 ! 3730: 266. LTT Leptothrix discophora 1 1 117 ! 3731: 267. LUM Lumbricus sp. 6 3 976 ! 3732: 268. LUP Lupinus luteus 5 5 380 ! 3733: 269. LVI Lactobacillus viridescens 4 3 1816 ! 3734: 270. LVI Lactobacillus vitulinus 1 1 1477 ! 3735: 271. LYC Lycopodium clavatum 1 1 121 ! 3736: 272. LYO Lycoperdon pyriforme 1 1 118 ! 3737: 273. MAG Methylomonas agile 1 1 119 ! 3738: 274. MAG Methylomonas methanica 2 2 1400 ! 3739: 275. MAG Methylomonas rubra 1 1 119 ! 3740: 276. MBF Methanobacterium formicicum 1 1 1476 ! 3741: 277. MBI Methanobacterium thermoautotrophicum 4 4 415 ! 3742: 278. MES Methanosarcina barkeri 1 1 130 ! 3743: 279. MET Metridium senile 6 3 963 ! 3744: 280. MGL Metasequoia glyptostroboides 1 1 120 ! 3745: 281. MJU Microstroma juglandis 1 1 121 ! 3746: 282. MLC Methylococcus capsulatus 3 3 1469 ! 3747: 283. MLM Moloney murine leukemia virus 1 1 74 ! 3748: 284. MLU Micrococcus luteus 2 2 238 ! 3749: 285. MLY Micrococcus lysodeikticus 1 1 120 ! 3750: 286. MNI Mnium rugicum 2 1 157 ! 3751: 287. MOR Mortierella formosensis 1 1 120 ! 3752: 288. MPO Marchantia polymorpha 1 1 119 ! 3753: 289. MSE Megasphaera elsdenii 1 1 1567 ! 3754: 290. MSG Mycobacterium asiaticum 2 1 1368 ! 3755: 291. MSG Mycobacterium aurum 2 1 1349 ! 3756: 292. MSG Mycobacterium avium 4 2 2735 ! 3757: 293. MSG Mycobacterium chelonei 2 1 1355 ! 3758: 294. MSG Mycobacterium chitae 2 1 1359 ! 3759: 295. MSG Mycobacterium fallax 2 1 1348 ! 3760: 296. MSG Mycobacterium flavescens 2 1 1357 ! 3761: 297. MSG Mycobacterium gordonae 2 1 1373 ! 3762: 298. MSG Mycobacterium kansasii 2 1 1369 ! 3763: 299. MSG Mycobacterium leprae 1 1 313 ! 3764: 300. MSG Mycobacterium neoaurum 2 1 1354 ! 3765: 301. MSG Mycobacterium nonchromogenicum 2 1 1376 ! 3766: 302. MSG Mycobacterium paratuberculosis 2 1 1367 ! 3767: 303. MSG Mycobacterium phlei 2 1 1357 ! 3768: 304. MSG Mycobacterium senegalense 2 1 1356 ! 3769: 305. MSG Mycobacterium smegmatis 1 1 77 ! 3770: 306. MSG Mycobacterium sp. 4 2 2715 ! 3771: 307. MSG Mycobacterium terrae 2 1 1363 ! 3772: 308. MSG Mycobacterium thermoresistible 2 1 1359 ! 3773: 309. MSG Mycobacterium triviale 2 1 1351 ! 3774: 310. MSG Mycobacterium tuberculosis 1 1 116 ! 3775: 311. MSL Mytilus edulis 1 1 119 ! 3776: 312. MTB Methylobacterium extorquens 2 2 1471 ! 3777: 313. MTB Methylobacterium organophilum 2 2 1431 ! 3778: 314. MTB Methylobacterium sp. 1 1 1052 ! 3779: 315. MTE Methylosporovibrio methanica 1 1 1306 ! 3780: 316. MUS Mus musculus 40 40 4555 ! 3781: 317. MYA Mya arenaria 6 3 927 ! 3782: 318. MYC Mycoplasma capricolum 3 3 259 ! 3783: 319. MYC Mycoplasma hyopneumoniae 3 3 1799 ! 3784: 320. MYC Mycoplasma mycoides 7 6 1885 ! 3785: 321. MYC Mycoplasma sp. 24 24 34006 ! 3786: 322. MYL Methylosinus trichosporium 2 2 1575 ! 3787: 323. MYM Methylophilus methylotrophus 2 2 1619 ! 3788: 324. MYP Methylocystis parvus 2 2 1433 ! 3789: 325. MZE Zea mays 1 1 50 ! 3790: 326. NDU Nematospiroides dubius 1 1 360 ! 3791: 327. NEC Nectria haematococca 6 6 1152 ! 3792: 328. NEM Ascaris suum 22 22 1251 ! 3793: 329. NEU Neurospora crassa 6 6 1100 ! 3794: 330. NGO Neisseria denitrificans 1 1 1478 ! 3795: 331. NGO Neisseria gonorrhoeae 1 1 1486 ! 3796: 332. NIF Nitella flexilis 1 1 121 ! 3797: 333. NIT Nitrobacter winogradskyi 1 1 117 ! 3798: 334. OCE Oceanospirillum linum 1 1 1542 ! 3799: 335. ONG Onchocerca gibsoni 1 1 363 ! 3800: 336. OPW Ophiocoma wendtii 9 3 1036 ! 3801: 337. PAE Palaemonetes kadiakensis 1 1 1877 ! 3802: 338. PAR Paramecium caudatum 1 1 366 ! 3803: 339. PAR Paramecium primaurelia 1 1 366 ! 3804: 340. PAR Paramecium tetraurelia 1 1 120 ! 3805: 341. PAS Pasteurella multocida 3 3 1926 ! 3806: 342. PBL Phycomyces blakesleeanus 1 1 120 ! 3807: 343. PBR Perinereis brevicirris 1 1 120 ! 3808: 344. PCL Prochloron sp. 1 1 122 ! 3809: 345. PCR Philosamia cynthia ricini 2 2 289 ! 3810: 346. PDE Paracoccus denitrificans 1 1 117 ! 3811: 347. PEA Pisum sativum 8 8 824 ! 3812: 348. PEC Penicillium chrysogenum 1 1 119 ! 3813: 349. PEP Penicillium patulum 1 1 119 ! 3814: 350. PEU Penaeus aztecus 1 1 1902 ! 3815: 351. PFA Plasmodium falciparum 1 1 78 ! 3816: 352. PGO Phascolopsis gouldii 1 1 120 ! 3817: 353. PHS Phasianus colchicus 1 1 95 ! 3818: 354. PHV Phaseolus vulgaris 1 1 75 ! 3819: 355. PHY Pythium hydnosporum 1 1 118 ! 3820: 356. PIL Pilayella littoralis 1 1 118 ! 3821: 357. PIR Phlyctochytrium irregulare 1 1 118 ! 3822: 358. PIS Pimelobacter simplex 1 1 120 ! 3823: 359. PIV Pivellula marina 2 1 2885 ! 3824: 360. PLA Platygloea peniophorae 1 1 119 ! 3825: 361. PLC Planococcus citreus 2 1 116 ! 3826: 362. PLC Planococcus kocurii 2 1 116 ! 3827: 363. PLE Phleogena faginea 1 1 119 ! 3828: 364. PLL Pirella marina 1 1 110 ! 3829: 365. PLL Pirella sp. 2 2 222 ! 3830: 366. PLT Planctomyces brasiliensis 1 1 110 ! 3831: 367. PLT Planctomyces limnophilus 1 1 111 ! 3832: 368. PLT Planctomyces staleyi 1 1 1525 ! 3833: 369. PMC Pneumocystis carinii 1 1 120 ! 3834: 370. PMI Prorocentrum micans 1 1 364 ! 3835: 371. PNC Pseudonocardia thermophila 1 1 1246 ! 3836: 372. PNU Psilotum nudum 2 2 171 ! 3837: 373. POC Procaris ascensionis 1 1 1874 ! 3838: 374. POO Prosthecochloris aestuarii 1 1 110 ! 3839: 375. POR Porocephalus crotali 1 1 1830 ! 3840: 376. POS Pleurotus ostreatus 1 1 118 ! 3841: 377. PPO Puccinia poarum 1 1 118 ! 3842: 378. PRA Procambarus leonensis 1 1 1869 ! 3843: 379. PRE Planocera reticulata 1 1 120 ! 3844: 380. PRM Proteus vulgaris 4 4 1925 ! 3845: 381. PSE Pseudomonas aeruginosa 2 2 1637 ! 3846: 382. PSE Pseudomonas cepacia 2 2 1589 ! 3847: 383. PSE Pseudomonas fluorescens 2 1 120 ! 3848: 384. PSE Pseudomonas sp. 1 1 118 ! 3849: 385. PT4 Bacteriophage T4 17 12 979 ! 3850: 386. PT5 Bacteriophage T5 9 9 711 ! 3851: 387. PTE Porphyra tenera 1 1 121 ! 3852: 388. PTR Plagiomnium trichomanes 1 1 119 ! 3853: 389. PYE Porphyra yezoensis 1 1 121 ! 3854: 390. QUL Coturnix coturnix 1 1 136 ! 3855: 391. RAB Oryctolagus cuniculus 15 11 4955 ! 3856: 392. RAT Rattus norvegicus 60 45 6084 ! 3857: 393. RAT Rattus rattus 4 4 230 ! 3858: 394. RCA Rhodobacter capsulatus 2 2 235 ! 3859: 395. RCY Russula cyanoxantha 1 1 119 ! 3860: 396. REC Renobacter vacuolatum 1 1 116 ! 3861: 397. RER Rhodococcus equi 2 1 1360 ! 3862: 398. RER Rhodococcus erythropolis 1 1 121 ! 3863: 399. RHC Rhizoctonia crocorum 1 1 119 ! 3864: 400. RHZ Rhizoctonia hiemalis 1 1 119 ! 3865: 401. RIC Oryza sativa 2 2 417 ! 3866: 402. RIF Riftia pachyptila 6 3 929 ! 3867: 403. RIR Rickettsia rickettsii 2 1 1443 ! 3868: 404. RIR Rickettsia typhi 2 1 1444 ! 3869: 405. RMA Rhodopseudomonas marina 1 1 1417 ! 3870: 406. RPA Rhodopseudomonas palustris 1 1 119 ! 3871: 407. RRU Rhodospirillum rubrum 2 2 161 ! 3872: 408. RSP Rhodospirillum rubrum 1 1 1446 ! 3873: 409. RSS Rhodobacter sphaeroides 1 1 115 ! 3874: 410. RTO Rhabditis tokai 1 1 119 ! 3875: 411. RYE Secale cereale 3 3 356 ! 3876: 412. SAC Sulfolobus acidocaldarius 2 2 204 ! 3877: 413. SAG Schizochytrium aggregatum 1 1 119 ! 3878: 414. SAH Saccharum officinarum 1 1 50 ! 3879: 415. SAU Stigmatella aurantiaca 2 2 239 ! 3880: 416. SCC Scyliorhinus caniculus 1 1 120 ! 3881: 417. SCL Styela clava 6 3 967 ! 3882: 418. SCM Schistosoma mansoni 2 2 215 ! 3883: 419. SCS Saccharopolyspora hirsuta 1 1 1284 ! 3884: 420. SCU Thyone briareus 6 3 1059 ! 3885: 421. SEP Septobasidium carestianum 1 1 119 ! 3886: 422. SFE Saprolegnia ferax 1 1 118 ! 3887: 423. SFU Sargassum fulvellum 1 1 118 ! 3888: 424. SHE Shewanella hanedai 2 1 120 ! 3889: 425. SHP Ovis sp. 1 1 76 ! 3890: 426. SHR Artemia salina 2 2 282 ! 3891: 427. SJA Sabellastarte japonica 1 1 120 ! 3892: 428. SLI Synechococcus lividus 1 1 120 ! 3893: 429. SLM Physarum polycephalum 6 5 845 ! 3894: 430. SME Spiroplasma sp. 11 11 14826 ! 3895: 431. SMI Smittium culisetae 1 1 121 ! 3896: 432. SNL Arion rufus 3 2 276 ! 3897: 433. SNL Helix pomatia 1 1 119 ! 3898: 434. SOB Scenedesmus obliquus 5 5 407 ! 3899: 435. SOF Sepia officinalis 2 1 120 ! 3900: 436. SOS Stichopus oshimae 1 1 120 ! 3901: 437. SPG Saprospira grandis 1 1 121 ! 3902: 438. SPI Spinacia oleracea 3 2 205 ! 3903: 439. SPL Spirillum volutans 1 1 1492 ! 3904: 440. SPM Spirobolus marginatus 6 3 977 ! 3905: 441. SPO Sporolactobacillus inulinus 1 1 117 ! 3906: 442. SPS Spirogyra sp. 1 1 120 ! 3907: 443. SQD Illex illecebrosus 1 1 120 ! 3908: 444. SRG Sorghum bicolor 1 1 50 ! 3909: 445. SSO Sulfolobus solfataricus 1 1 126 ! 3910: 446. SSP Sulfolobus sp. 1 1 131 ! 3911: 447. STA Staphylococcus aureus 1 1 115 ! 3912: 448. STA Staphylococcus epidermidis 5 3 264 ! 3913: 449. STC Stentor coeruleus 1 1 353 ! 3914: 450. STE Stella humosa 1 1 117 ! 3915: 451. STF Asteria amurensis 2 2 195 ! 3916: 452. STF Asterias forbesi 9 3 1045 ! 3917: 453. STF Asterina pectinifera 1 1 120 ! 3918: 454. STM Streptomyces griseus 1 1 120 ! 3919: 455. STN Stenopus hispidus 1 1 1885 ! 3920: 456. STR Streptococcus cremoris 1 1 117 ! 3921: 457. STR Streptococcus faecalis 1 1 117 ! 3922: 458. STR Streptococcus sp. 1 1 1577 ! 3923: 459. STY Salmonella typhimurium 7 6 459 ! 3924: 460. SUD Pseudocentrotus depressus 1 1 120 ! 3925: 461. SUE Heliocidaris erythrogramma 6 3 1043 ! 3926: 462. SUE Heliocidaris tuberculata 6 3 910 ! 3927: 463. SUH Hemicentrotus pulcherrimus 1 1 120 ! 3928: 464. SUL Lytechinus pictus 6 3 1046 ! 3929: 465. SUP Psammechinus miliaris 8 8 422 ! 3930: 466. SUS Strongylocentrotus purpuratus 6 3 988 ! 3931: 467. SYB Syntrophospora bryantii 1 1 1532 ! 3932: 468. SYC Synechocystis sp. 1 1 76 ! 3933: 469. SYN Synechococcus lividus 1 1 119 ! 3934: 470. SYW Syntrophomonas wolfei 1 1 1532 ! 3935: 471. TAM Tatlockia maceachernii 3 3 458 ! 3936: 472. TAM Tatlockia micdadei 9 9 1286 ! 3937: 473. TAN Tilletiaria anomala 1 1 118 ! 3938: 474. TAP Taphrina deformans 1 1 119 ! 3939: 475. TCO Tilletiaria controversa 1 1 118 ! 3940: 476. TET Tetrahymena thermophila 7 7 615 ! 3941: 477. TEY Tetrahymena pyriformis 3 3 623 ! 3942: 478. TFE Acidiphilium cryptum 1 1 122 ! 3943: 479. TFE Thiobacillus acidophilus 1 1 120 ! 3944: 480. TFE Thiobacillus ferrooxidans 2 2 240 ! 3945: 481. TFE Thiobacillus intermedius 1 1 117 ! 3946: 482. TFE Thiobacillus neapolitanus 1 1 119 ! 3947: 483. TFE Thiobacillus novellus 1 1 120 ! 3948: 484. TFE Thiobacillus perometabolis 1 1 116 ! 3949: 485. TFE Thiobacillus sp. 1 1 117 ! 3950: 486. TFE Thiobacillus thiooxidans 1 1 121 ! 3951: 487. TFE Thiobacillus thioparus 1 1 118 ! 3952: 488. TFE Thiobacillus versutus 1 1 116 ! 3953: 489. TFE Thiomicrospira pelophila 1 1 118 ! 3954: 490. TFE Thiomicrospira sp. 1 1 117 ! 3955: 491. THA Artificial gene 3 3 276 ! 3956: 492. THC Thermococcus celer 2 2 1611 ! 3957: 493. THR Thermomicrobium roseum 1 1 127 ! 3958: 494. THT Thiothrix nivea 1 1 122 ! 3959: 495. THT Thiothrix sp. 1 1 120 ! 3960: 496. THV Thiovulum sp. 1 1 123 ! 3961: 497. TLA Thermomyces lanuginosus 2 2 276 ! 3962: 498. TLP Torulopsis utilis 1 1 121 ! 3963: 499. TOB Nicotiana tabacum 2 2 152 ! 3964: 500. TOR Trichosporon oryzae 1 1 118 ! 3965: 501. TRB Trypanosoma brucei 2 2 106 ! 3966: 502. TRD Tripsacum dactyloides 1 1 50 ! 3967: 503. TRF Crithidia fasciculata 7 7 1305 ! 3968: 504. TRI Trichomonas vaginalis 1 1 341 ! 3969: 505. TTE Thermoproteus tenax 1 1 1504 ! 3970: 506. TTH Thermus aquaticus 2 2 243 ! 3971: 507. TTH Thermus sp. 2 2 243 ! 3972: 508. TTH Thermus thermophilus 5 4 354 ! 3973: 509. TUL Tulasnella violea 1 1 118 ! 3974: 510. TUM Tuberoidobacter mutans 1 1 116 ! 3975: 511. TVI Thraustochytrium visurgense 1 1 119 ! 3976: 512. UPE Ulva pertusa 1 1 120 ! 3977: 513. URE Ureaplasma urealyticum 1 1 1464 ! 3978: 514. UTH Uthatobasidium fusisporum 1 1 118 ! 3979: 515. UUN Urechis unicinctus 1 1 120 ! 3980: 516. VCH Vibrio cholerae 1 1 119 ! 3981: 517. VER Verrucomicrobium spinosum 1 1 116 ! 3982: 518. VFA Vicia faba 2 2 327 ! 3983: 519. VIB Aeromonas hydrophila 1 1 118 ! 3984: 520. VIB Aeromonas media 1 1 119 ! 3985: 521. VIB Aeromonas salmonicida 1 1 119 ! 3986: 522. VIB Alteromonas colwelliana 2 1 120 ! 3987: 523. VIB Alteromonas putrifaciens 1 1 120 ! 3988: 524. VIB Photobacterium angustum 1 1 120 ! 3989: 525. VIB Photobacterium leiognathi 1 1 120 ! 3990: 526. VIB Photobacterium sp. 1 1 120 ! 3991: 527. VIB Plesiomonas shigelloides 1 1 120 ! 3992: 528. VIB Vibrio alginolyticus 1 1 121 ! 3993: 529. VIB Vibrio anguillarum 1 1 120 ! 3994: 530. VIB Vibrio carchariae 1 1 120 ! 3995: 531. VIB Vibrio cincinnatii 1 1 120 ! 3996: 532. VIB Vibrio damsela 1 1 120 ! 3997: 533. VIB Vibrio fischeri 1 1 120 ! 3998: 534. VIB Vibrio fluvialis 2 2 240 ! 3999: 535. VIB Vibrio gazogenes 1 1 120 ! 4000: 536. VIB Vibrio logei 1 1 120 ! 4001: 537. VIB Vibrio marinus 2 2 236 ! 4002: 538. VIB Vibrio metschnitovii 1 1 120 ! 4003: 539. VIB Vibrio mimicus 1 1 120 ! 4004: 540. VIB Vibrio natriegens 1 1 121 ! 4005: 541. VIB Vibrio nereis 2 1 121 ! 4006: 542. VIB Vibrio parahaemolyticus 2 2 239 ! 4007: 543. VIB Vibrio pelagius 1 1 120 ! 4008: 544. VIB Vibrio proteolyticus 1 1 120 ! 4009: 545. VIB Vibrio psychroerythus 1 1 119 ! 4010: 546. VIB Vibrio sp. 5 4 478 ! 4011: 547. VIT Vitreoscilla sp. 2 2 234 ! 4012: 548. VIT Vitreoscilla stercoraria 2 2 1608 ! 4013: 549. VVU Vibrio vulnificus 1 1 120 ! 4014: 550. WHT Triticum aestivum 17 14 1729 ! 4015: 551. WHT Triticum sp. 2 2 152 ! 4016: 552. WHT Triticum vulgare 2 2 282 ! 4017: 553. WLB Wolbachia persica 2 1 1475 ! 4018: 554. WOL Wolinella succinogenes 1 1 1503 ! 4019: 555. XEB Xenopus borealis 3 3 477 ! 4020: 556. XEL Xenopus laevis 20 17 4158 ! 4021: 557. XET Xenopus tropicalis 2 2 242 ! 4022: 558. XYL Xylella fastidiosa 1 1 1493 ! 4023: 559. YSA Candida albicans 1 1 121 ! 4024: 560. YSC Saccharomyces cerevisiae 62 47 4920 ! 4025: 561. YSG Saccharomyces carlsbergensis 4 2 242 ! 4026: 562. YSK Kluyveromyces lactis 1 1 121 ! 4027: 563. YSP Schizosaccharomyces pombe 8 8 630 ! 4028: 564. YSR Pichia membranaefaciens 1 1 120 ! 4029: 565. YST Yeast sp. 7 6 492 ! 4030: 566. YSU Candida utilis 12 10 815 ! 4031: 567. Unidentified 177 169 19082 ! 4032: ! 4033: Total 1946 1647 445723 ! 4034: ! 4035: VIRAL ! 4036: ! 4037: Key Name Reports Entries Bases ! 4038: ------------------------------------------------------------------------------- ! 4039: 1. AA2 Adeno associated virus 9 6 7879 ! 4040: 2. AAF Avian musculoaponeurotic fibrosarcoma virus ! 4041: 2 1 3171 ! 4042: 3. AC2 Avian carcinoma virus 14 11 18641 ! 4043: 4. ACB Avian erythroblastosis virus 19 15 18700 ! 4044: 5. ACE Avian endogenous virus 5 5 2772 ! 4045: 6. ACF Fujinami sarcoma virus 3 2 7503 ! 4046: 7. ACM Avian myelocytomatosis retrovirus 10 8 11975 ! 4047: 8. ACR Avian reticuloendotheliosis virus 12 8 8401 ! 4048: 9. ACS Avian sarcoma virus 15 13 16357 ! 4049: 10. AD4 Mastadenovirus h40 4 4 10795 ! 4050: 11. AD4 Mastadenovirus h41 3 3 8920 ! 4051: 12. ADA Mastadenovirus s30 5 5 1318 ! 4052: 13. ADB Mastadenovirus 2 82 5 36399 ! 4053: 14. ADB Mastadenovirus c2 1 1 196 ! 4054: 15. ADC Mastadenovirus h3 12 11 9026 ! 4055: 16. ADD Mastadenovirus h4 7 5 5078 ! 4056: 17. ADE Mastadenovirus 7 1 1 2718 ! 4057: 18. ADE Mastadenovirus h5 35 11 30276 ! 4058: 19. ADG Mastadenovirus h7 15 6 13245 ! 4059: 20. ADG Mastadenovirus s7 6 5 4931 ! 4060: 21. ADI Mastadenovirus 9 2 2 332 ! 4061: 22. ADJ Mastadenovirus 10 1 1 135 ! 4062: 23. ADL Mastadenovirus 2 2 1 430 ! 4063: 24. ADL Mastadenovirus h12 41 23 19901 ! 4064: 25. ADR Mastadenovirus 18 2 2 364 ! 4065: 26. ADT Tupaia adenovirus 4 4 3784 ! 4066: 27. ADU Mastadenovirus 19 1 1 154 ! 4067: 28. ADV Adenovirus VA 8 7 11146 ! 4068: 29. ADV Mastadenovirus 2 2 1549 ! 4069: 30. ADV Mastadenovirus h40 1 1 1849 ! 4070: 31. ADV Mastadenovirus h41 2 1 1939 ! 4071: 32. ADX Mastadenovirus bos1 1 1 159 ! 4072: 33. ADX Mastadenovirus mus 7 5 9449 ! 4073: 34. ADY Eggdrop syndrome-1976 virus 1 1 52 ! 4074: 35. ADZ Mastadenovirus 31 2 2 300 ! 4075: 36. ADZ Mastadenovirus bos3 1 1 2849 ! 4076: 37. ADZ Mastadenovirus c2 2 2 3689 ! 4077: 38. AEA Avian adenovirus 3 3 576 ! 4078: 39. AEC Canine adenovirus 4 4 805 ! 4079: 40. AEE Equine adenovirus 4 4 617 ! 4080: 41. AIN Aino virus 1 1 850 ! 4081: 42. ALE Rous associated virus 9 8 5119 ! 4082: 43. ALK Avian leukemia virus 2 2 454 ! 4083: 44. ALM Avian myeloblastosis virus 6 6 6465 ! 4084: 45. ALR Rous sarcoma virus 162 136 65936 ! 4085: 46. ALV Avian leukosis virus 12 12 5400 ! 4086: 47. APH Foot and mouth disease virus 125 120 77985 ! 4087: 48. ARE Avian retrovirus 2 2 698 ! 4088: 49. ARE Avian retrovirus IC10 3 2 6013 ! 4089: 50. ARR Adult diarrhea rotavirus 2 2 1445 ! 4090: 51. ASB Avocado sunblotch viroid 20 19 4715 ! 4091: 52. ASS Apple scar skin viroid 1 1 329 ! 4092: 53. ASV African swine fever virus 4 3 6376 ! 4093: 54. BBM Broad bean mottle virus 3 3 680 ! 4094: 55. BBV Black beetle virus 4 3 4893 ! 4095: 56. BCT Beet curly top virus 1 1 2993 ! 4096: 57. BEC Bovine enteritic coronavirus 1 1 1710 ! 4097: 58. BEV Bovine enterovirus 1 1 7414 ! 4098: 59. BIM Bovine immunodeficiency-like virus 1 1 8482 ! 4099: 60. BLC Bunyamwera virus 3 3 12294 ! 4100: 61. BLC Bunyavirus La Crosse 19 18 9070 ! 4101: 62. BLC Germiston bunyavirus 2 2 5514 ! 4102: 63. BLV Bovine leukemia virus 20 20 31133 ! 4103: 64. BNY Beet necrotic yellow vein mosaic virus 6 6 17031 ! 4104: 65. BOO Boolarra virus 2 1 1305 ! 4105: 66. BRV Berne virus 2 2 376 ! 4106: 67. BTV Bluetongue virus 31 23 43490 ! 4107: 68. BVD Bovine viral diarrhea virus 1 1 12573 ! 4108: 69. BWY Beet western yellow virus 5 3 7958 ! 4109: 70. BYD Barley yellow dwarf virus 3 2 6280 ! 4110: 71. CAD Canine distemper virus 4 4 6857 ! 4111: 72. CAN Carnation etched ring virus 1 1 7932 ! 4112: 73. CAP Capripoxvirus 4 4 10417 ! 4113: 74. CAS Cassava latent virus 2 2 5503 ! 4114: 75. CASNS Cas NS1 retrovirus 1 1 2711 ! 4115: 76. CBV Choristoneura biennis virus 1 1 1173 ! 4116: 77. CCC Cadang-cadang coconut viroid 3 3 779 ! 4117: 78. CCP Cricket paralysis virus 1 1 1594 ! 4118: 79. CEA Caprine arthritis encephalitis virus 9 8 11854 ! 4119: 80. CEV Citrus exocortis viroid 4 4 1484 ! 4120: 81. CFD Coconut foliar decay virus 1 1 1291 ! 4121: 82. CHM Chloris striate mosaic virus 1 1 2750 ! 4122: 83. CHV Chlorella virus 2 2 3727 ! 4123: 84. CMV Carnation mottle virus 1 1 4003 ! 4124: 85. CNV Cucumber necrosis virus 1 1 4701 ! 4125: 86. CO4 Coliphage N4 2 2 1759 ! 4126: 87. COB Bovine coronavirus 8 5 15070 ! 4127: 88. CPB Chlorella PBCV-1 virus 1 1 4265 ! 4128: 89. CPE Euxoa scandens cytoplasmic polyhedrosis virus ! 4129: 1 1 882 ! 4130: 90. CPF Cucumber pale fruit viroid 3 2 604 ! 4131: 91. CPR Chandipura virus 1 1 1751 ! 4132: 92. CPV Cowpox virus 20 20 17648 ! 4133: 93. CRV Cymbidium ringspot virus 2 1 4733 ! 4134: 94. CSO Campoletis sonorensis virus 8 6 9418 ! 4135: 95. CSV Chrysanthemum stunt viroid 4 3 1040 ! 4136: 96. CTN Coconut tinangaja viroid 1 1 254 ! 4137: 97. CXB Coxsackievirus B1 2 2 8844 ! 4138: 98. CXB Coxsackievirus B3 5 5 20481 ! 4139: 99. CXB Coxsackievirus B4 1 1 7395 ! 4140: 100. CYM Clover yellow mosaic potexvirus 1 1 1051 ! 4141: 101. CYS Lymphocystis disease virus of fish 3 3 5310 ! 4142: 102. DEN Dengue virus 105 103 90462 ! 4143: 103. DHV Dhori virus 1 1 1479 ! 4144: 104. DMB Thymotropic retrovirus type B 1 1 285 ! 4145: 105. DNV Densonucleosis virus 1 1 4277 ! 4146: 106. DPF Dapple peach fruit disease viroid 1 1 297 ! 4147: 107. DPP Dapple plum and peach fruit disease viroid ! 4148: 1 1 297 ! 4149: 108. DUG Dugbe nairovirus 1 1 1712 ! 4150: 109. EAE Equine arthritis encephalitis virus 1 1 2580 ! 4151: 110. EBO Ebola virus 2 2 3178 ! 4152: 111. ECV Echo 11 virus 1 1 98 ! 4153: 112. ECV Echo 6 virus 1 1 99 ! 4154: 113. ECV Echo 9 virus 2 2 615 ! 4155: 114. EEE Eastern equine encephalomyelitis virus 5 5 5163 ! 4156: 115. EEV Venezuelan equine encephalitis virus 7 6 8300 ! 4157: 116. EEW Western equine encephalitis virus 2 2 4521 ! 4158: 117. EIA Equine infectious anemia virus 18 11 24136 ! 4159: 118. EMC Encephalomyocarditis virus 10 9 27249 ! 4160: 119. FCG Gardner-Arnstein Feline Leukemia oncovirus B ! 4161: 2 2 3863 ! 4162: 120. FCL Feline calicivirus 2 2 6358 ! 4163: 121. FCR RD114 retrovirus 1 1 126 ! 4164: 122. FCS Feline sarcoma virus 7 7 14248 ! 4165: 123. FCV Feline leukemia virus 17 15 38510 ! 4166: 124. FHV Flock house virus 2 1 1400 ! 4167: 125. FIP Feline infectious peritonitis virus 1 1 4500 ! 4168: 126. FIV Feline immunodeficiency virus 6 3 19318 ! 4169: 127. FLA Influenza virus type A 504 412 430270 ! 4170: 128. FLB Influenza virus type B 85 72 102701 ! 4171: 129. FLC Influenza virus type C 29 29 46959 ! 4172: 130. FMV Figwort mosaic virus 1 1 7743 ! 4173: 131. FPV Fowlpox virus 6 6 25819 ! 4174: 132. FV3 Frog virus 3 3 2 2273 ! 4175: 133. GPB Granulosis virus 1 1 999 ! 4176: 134. GPR Gottfried porcine rotavirus 1 1 3302 ! 4177: 135. GSB GS virus 1 1 307 ! 4178: 136. GSH Ground squirrel hepatitis virus 1 1 3311 ! 4179: 137. GVI Grapevine chrome mosaic virus 4 2 11653 ! 4180: 138. GVI Grapevine viroid 3 2 665 ! 4181: 139. GVT Trichoplusia ni granulosis virus 1 1 998 ! 4182: 140. GYS Grapevine yellow speckle viroid 3 2 730 ! 4183: 141. HAN Hantaan virus 6 5 9735 ! 4184: 142. HBD Duck hepatitis B virus 6 5 12249 ! 4185: 143. HBH Heron hepatitis B virus 1 1 3027 ! 4186: 144. HCV Hog cholera virus 3 2 24567 ! 4187: 145. HIV Human immunodeficiency virus type 1 101 53 187276 ! 4188: 146. HIV Human immunodeficiency virus type 2 13 9 75733 ! 4189: 147. HIV Human lymphotropic virus type III 1 1 261 ! 4190: 148. HIV Human T-cell lymphotropic virus type II 7 3 10520 ! 4191: 149. HJV Highlands J virus 2 2 505 ! 4192: 150. HL1 Human lymphotropic virus type I 15 13 26925 ! 4193: 151. HL2 Human lymphotropic virus type II 4 4 5400 ! 4194: 152. HLV Hop latent viroid 2 1 256 ! 4195: 153. HOB Human coronavirus 4 3 3550 ! 4196: 154. HOJ HoJo virus 1 1 3613 ! 4197: 155. HOM Mus hortulanus virus 3 3 4668 ! 4198: 156. HOP Hop Stunt Viroid 10 7 2094 ! 4199: 157. HPA Hepatitis A virus 13 11 42881 ! 4200: 158. HPB Hepatitis B virus 74 70 76139 ! 4201: 159. HPC Hepatitis C virus 3 2 7893 ! 4202: 160. HPD Hepatitis delta virus 4 3 3523 ! 4203: 161. HPE Hepatitis E virus 2 1 2570 ! 4204: 162. HPU Duck hepatitis virus 2 1 3021 ! 4205: 163. HPV Hepatitis virus 2 2 4553 ! 4206: 164. HRD Human retrovirus type D 1 1 8785 ! 4207: 165. HRV Human rhinovirus 11 9 31251 ! 4208: 166. HS1 Herpes simplex virus type 1 148 109 315961 ! 4209: 167. HS2 Herpes simplex virus type 2 37 31 54029 ! 4210: 168. HS4 Epstein-Barr virus 88 68 310429 ! 4211: 169. HS5 Human cytomegalovirus 44 40 136382 ! 4212: 170. HS5 Murine cytomegalovirus 4 3 6921 ! 4213: 171. HS5 Simian cytomegalovirus 1 1 880 ! 4214: 172. HS6 Human herpesvirus type 6 2 2 26298 ! 4215: 173. HSB Bovine herpesvirus type 1 9 9 8227 ! 4216: 174. HSC Simian cytomegalovirus 2 2 2294 ! 4217: 175. HSE Equine herpesvirus type 1 19 17 45132 ! 4218: 176. HSG Gallid herpesvirus type 1 5 5 10607 ! 4219: 177. HSK Gallid herpesvirus type 2 4 4 11325 ! 4220: 178. HSL Feline herpesvirus 1 1 1619 ! 4221: 179. HSL Herpesvirus ateles 1 1 2577 ! 4222: 180. HSM Gallid herpesvirus type 1 2 2 3367 ! 4223: 181. HSO Herpesvirus papio 2 2 806 ! 4224: 182. HSP Human spumaretrovirus 3 3 12095 ! 4225: 183. HSS Herpesvirus saimiri 30 29 22133 ! 4226: 184. HSS Pseudorabies virus 18 14 38325 ! 4227: 185. HST Herpesvirus tamarinus 2 1 2556 ! 4228: 186. HSU Herpesvirus tupaia 1 1 863 ! 4229: 187. HSV Herpes simplex virus 1 1 501 ! 4230: 188. HSY Herpesvirus sylvilagus 1 1 559 ! 4231: 189. HTV Human adult T-cell leukemia virus 3 2 3556 ! 4232: 190. IBA Avian infectious bronchitis virus 24 24 31163 ! 4233: 191. IBB Infectious bronchitis virus 3 2 7215 ! 4234: 192. IBD Infectious bursal disease virus of chickens ! 4235: 4 3 9138 ! 4236: 193. IHN Infectious hematopoietic necrosis virus 2 2 2961 ! 4237: 194. INS Insect iridescent virus type 22 1 1 2183 ! 4238: 195. IPN Infectious pancreatic necrosis virus 2 1 3097 ! 4239: 196. IRI Iridescent virus type 1 1 1 2461 ! 4240: 197. IRI Iridescent virus type 6 3 3 10327 ! 4241: 198. JEV Japanese encephalitis virus 4 4 18496 ! 4242: 199. KUN Kunjin virus 1 1 10664 ! 4243: 200. KVS Killer virus of S.cerevisiae 8 6 1872 ! 4244: 201. LCV Lymphocytic choriomeningitis virus 11 11 19716 ! 4245: 202. LDV Lactate dehydrogenase-elevating virus 6 6 1684 ! 4246: 203. LEE Lee virus 1 1 3616 ! 4247: 204. LSV Lassa virus 4 4 10307 ! 4248: 205. MAA Alfalfa mosaic virus 28 19 15793 ! 4249: 206. MAV Myeloblastosis-associated virus 1 1 1173 ! 4250: 207. MBG Bean golden mosaic virus 4 4 10465 ! 4251: 208. MBG Bean yellow mosaic virus 1 1 1015 ! 4252: 209. MBR Brome mosaic virus 16 12 9903 ! 4253: 210. MBS Barley stripe mosaic virus 11 8 13655 ! 4254: 211. MBV Middleburg virus 4 3 3394 ! 4255: 212. MCA Cauliflower mosaic virus 28 25 41207 ! 4256: 213. MCC Cowpea chlorotic mottle virus 7 6 6379 ! 4257: 214. MCF Mink cell focus-forming virus 8 8 8202 ! 4258: 215. MCG Cucumber green mottle mosaic virus 2 2 2421 ! 4259: 216. MCM Maize chlorotic mottle virus 2 1 4437 ! 4260: 217. MCP Cowpea mosaic virus 8 8 10170 ! 4261: 218. MCV Cucumber mosaic virus 53 52 34142 ! 4262: 219. MDP Aleutian mink disease parvovirus 4 2 8255 ! 4263: 220. MEA Measles virus 30 25 83843 ! 4264: 221. MEV Maus-Elberfeld virus 1 1 54 ! 4265: 222. MGR Maguari bunyavirus 1 1 945 ! 4266: 223. MHV Murine hepatitis virus 39 33 39489 ! 4267: 224. MLA Abelson murine leukemia virus 8 6 10848 ! 4268: 225. MLE Mouse RFV endogenous retrovirus 2 2 684 ! 4269: 226. MLF Friend mink cell focus-inducing virus 5 4 7000 ! 4270: 227. MLF Friend murine leukemia virus 2 2 4170 ! 4271: 228. MLF Friend spleen focus-forming virus 9 9 13488 ! 4272: 229. MLG Gross passage A murine leukemia virus 2 2 1220 ! 4273: 230. MLK Kirsten murine leukemia virus 1 1 1335 ! 4274: 231. MLM Moloney murine leukemia virus 56 42 35727 ! 4275: 232. MLN Murine non-leukeminogenic retrovirus 1 1 529 ! 4276: 233. MLO AKV murine leukemia virus 7 2 9000 ! 4277: 234. MLR Rauscher spleen focus-forming virus 2 2 2244 ! 4278: 235. MLS Soule murine leukemia virus 2 2 1310 ! 4279: 236. MLT Tikaut murine leukemia virus 1 1 641 ! 4280: 237. MLV Murine leukemia virus 53 44 48928 ! 4281: 238. MLX Xenotropic murine leukemia virus 1 1 3060 ! 4282: 239. MMT Mouse mammary tumor virus 29 28 37314 ! 4283: 240. MNC Narcissus mosaic potexvirus 1 1 6955 ! 4284: 241. MOK Mokola lyssavirus 2 2 152 ! 4285: 242. MOP Mopeia virus 1 1 3419 ! 4286: 243. MPM Mouse polyomavirus 1 1 1155 ! 4287: 244. MPV Monkeypox virus 1 1 1276 ! 4288: 245. MRV Marburg virus 1 1 59 ! 4289: 246. MSB Southern bean mosaic virus 2 2 793 ! 4290: 247. MSC Sugarcane mosaic virus 1 1 1782 ! 4291: 248. MSH Harvey murine sarcoma virus 4 4 3226 ! 4292: 249. MSJ FBJ murine osteosarcoma virus 1 1 4226 ! 4293: 250. MSK Kirsten murine sarcoma virus 2 2 1933 ! 4294: 251. MSN Solanum nodiflorum mottle virus 1 1 377 ! 4295: 252. MSR FBR murine osteosarcoma virus 1 1 3811 ! 4296: 253. MSV Murine sarcoma virus 5 5 5020 ! 4297: 254. MSY Myeloproliferative sarcoma virus 3 3 5305 ! 4298: 255. MTG Tomato golden mosaic virus 3 3 6342 ! 4299: 256. MTR Tobacco rattle virus 7 7 20386 ! 4300: 257. MTS Lucerne transient streak virus 3 3 970 ! 4301: 258. MTV Tobacco mosaic virus 22 8 16050 ! 4302: 259. MTV Velvet tobacco mottle virus 1 1 366 ! 4303: 260. MTY Andean potato latent virus 1 1 96 ! 4304: 261. MTY Clitoria yellow vein virus 1 1 120 ! 4305: 262. MTY Eggplant mosaic virus 3 3 6469 ! 4306: 263. MTY Kennedya yellow mosaic virus 1 1 83 ! 4307: 264. MTY Ononis yellow mosaic virus 2 2 6342 ! 4308: 265. MTY Turnip yellow mosaic virus 20 16 15958 ! 4309: 266. MUM Mumps virus 11 9 13622 ! 4310: 267. MUR Murine retrovirus SL3-2 1 1 492 ! 4311: 268. MVE Murray Valley encephalitis virus 2 2 5994 ! 4312: 269. MVM Minute virus of mice 9 7 16222 ! 4313: 270. MYX Myxoma virus 3 2 4473 ! 4314: 271. MZS Maize streak virus 5 4 8139 ! 4315: 272. NDV Newcastle disease virus 49 47 98864 ! 4316: 273. NEV Nephropathia epidemica 2 2 5466 ! 4317: 274. NOD Nodamura virus 2 1 1335 ! 4318: 275. NPA Antheraea pernyi nuclear polyhedrosis virus ! 4319: 1 1 285 ! 4320: 276. NPA Autographa californica nuclear polyhedrosis virus ! 4321: 45 41 67447 ! 4322: 277. NPB Bombyx mori nuclear polyhedrosis virus 3 3 3931 ! 4323: 278. NPG Galleria mellonella nuclear polyhedrosis virus ! 4324: 5 5 2556 ! 4325: 279. NPM Mamestra brassicae nuclear polyhedrosis virus ! 4326: 1 1 2598 ! 4327: 280. NPO Orgyia pseudotsugata polyhedrosis virus 8 8 16937 ! 4328: 281. NPS Spodoptera frugiperda nuclear polyhedrosis virus ! 4329: 1 1 1557 ! 4330: 282. OLV Ovine lentivirus 2 2 18512 ! 4331: 283. ONN O'Nyong-nyong virus 2 1 11835 ! 4332: 284. ORF Orf virus 2 1 5003 ! 4333: 285. PCB Baboon endogenous virus 8 7 20105 ! 4334: 286. PCC Colobus type C cpc-1 endogenous retrovirus ! 4335: 2 2 373 ! 4336: 287. PCE Chimpanzee type C endogenous retrovirus 2 2 430 ! 4337: 288. PCG Gibbon leukemia virus 5 4 9202 ! 4338: 289. PCM Macaca endogenous retrovirus 1 1 126 ! 4339: 290. PCM Macaca mulatta type C retrovirus 4 4 938 ! 4340: 291. PCS Simian sarcoma virus 12 9 10868 ! 4341: 292. PEB Pea early browning virus 2 1 7073 ! 4342: 293. PEV Subacute sclerosing panencephalitis virus 3 3 3444 ! 4343: 294. PIB Bovine parainfluenza virus type 3 3 1 8700 ! 4344: 295. PIC Pichinde Arenavirus 8 8 12637 ! 4345: 296. PIF Human parainfluenza virus type 3 29 27 46139 ! 4346: 297. PLV Potato leaf roll virus 5 3 6650 ! 4347: 298. PLY Budgerigar fledgling disease virus 1 1 4980 ! 4348: 299. PLY Polyomavirus 131 39 35440 ! 4349: 300. PLY Polyomavirus BK 2 2 799 ! 4350: 301. PLY Polyomavirus JC 3 3 765 ! 4351: 302. PMP Papaya mosaic potexvirus 2 2 1039 ! 4352: 303. PMS Simian paramyxovirus (SV5) 1 1 1382 ! 4353: 304. PMV Pepper mottle virus 1 1 1480 ! 4354: 305. POL Poliovirus 120 106 78406 ! 4355: 306. POV Porcine parvovirus 1 1 3670 ! 4356: 307. PPA Avian papillomavirus 2 2 786 ! 4357: 308. PPB Bovine papillomavirus 14 14 32821 ! 4358: 309. PPC Hamster papovavirus 2 2 10672 ! 4359: 310. PPD Deer papillomavirus 1 1 8374 ! 4360: 311. PPE European Elk papillomavirus 4 3 8842 ! 4361: 312. PPH Human papillomavirus 40 38 101284 ! 4362: 313. PPI Micromys minutus papillomavirus 3 3 487 ! 4363: 314. PPL Lymphotropic papovavirus 1 1 5270 ! 4364: 315. PPM Monkey B-lymphotropic papovavirus 4 4 10920 ! 4365: 316. PPR Reindeer papillomavirus 2 2 930 ! 4366: 317. PPV Plum pox potyvirus 3 3 13827 ! 4367: 318. PRH Prospect Hill virus 1 1 1675 ! 4368: 319. PRV Porcine rotavirus 11 9 12190 ! 4369: 320. PSV Peanut stunt virus 1 1 393 ! 4370: 321. PTP Punta toro phlebovirus 6 6 7130 ! 4371: 322. PTV Potato spindle tuber viroid 5 5 1795 ! 4372: 323. PV1 Parvovirus H1 3 2 5302 ! 4373: 324. PV3 Parvovirus H3 1 1 125 ! 4374: 325. PVA Raccoon parvovirus 2 1 2410 ! 4375: 326. PVB Papovavirus BKV 38 25 18937 ! 4376: 327. PVB Parvovirus B19 4 4 11325 ! 4377: 328. PVC Canine parvovirus 4 4 10016 ! 4378: 329. PVD Bovine parvovirus 2 1 5517 ! 4379: 330. PVF Feline panleukopenia virus 10 6 16703 ! 4380: 331. PVM Mink enteritis virus 4 2 4888 ! 4381: 332. PVR Kilham rat virus 1 1 125 ! 4382: 333. PVR Parvovirus R1 2 2 548 ! 4383: 334. PVS Potato virus S 1 1 3552 ! 4384: 335. PVX Potato virus X 8 6 22573 ! 4385: 336. PVY Potato virus Y 8 5 17509 ! 4386: 337. RAV Rabies virus 21 20 32337 ! 4387: 338. RBF Malignant rabbit fibroma virus 3 3 446 ! 4388: 339. RBF Rabbit fibroma virus 15 15 28212 ! 4389: 340. RBV Rabbit rotavirus 1 1 1036 ! 4390: 341. RCM Red clover mottle virus 1 1 3543 ! 4391: 342. RDV Rice dwarf virus 5 3 5209 ! 4392: 343. REO Reovirus sp. 2 2 2903 ! 4393: 344. REO Reovirus type 1 21 19 14348 ! 4394: 345. REO Reovirus type 2 14 12 6823 ! 4395: 346. REO Reovirus type 3 48 34 25499 ! 4396: 347. RML Rauscher murine leukemia virus 3 3 395 ! 4397: 348. RNM Red clover necrotic mosaic virus 3 2 5338 ! 4398: 349. RO1 Rotavirus sp. 3 3 4074 ! 4399: 350. RO1 Rotavirus subgroup 1 3 2 2712 ! 4400: 351. RO2 Rotavirus subgroup 2 6 6 5955 ! 4401: 352. ROB Bovine rotavirus 21 16 24214 ! 4402: 353. ROH Human rotavirus 6 6 8164 ! 4403: 354. ROR Rhesus rotavirus 2 2 3424 ! 4404: 355. ROT Simian rotavirus SA11 19 15 20730 ! 4405: 356. RPF Rinderpest virus 5 5 10323 ! 4406: 357. RPV Raccoonpox virus 1 1 2195 ! 4407: 358. RRV Ross river virus 4 3 19686 ! 4408: 359. RSB Bovine syncytial virus 1 1 1201 ! 4409: 360. RSH Human respiratory syncytial virus 33 21 19332 ! 4410: 361. RSV Rat sarcoma virus 1 1 1380 ! 4411: 362. RUB Rubella virus 12 7 26119 ! 4412: 363. RVF Rift Valley fever virus 1 1 3884 ! 4413: 364. SAM Satellite arabis mosaic virus 1 1 300 ! 4414: 365. SAP Satellite panicum mosaic virus 1 1 826 ! 4415: 366. SFS Sandfly fever Sicilian virus 2 1 1747 ! 4416: 367. SFV Semliki forest virus 12 3 15380 ! 4417: 368. SHV Simian hepatitis A virus 6 4 4331 ! 4418: 369. SIG Sigma virus 1 1 1718 ! 4419: 370. SIN Sindbis virus 16 6 18450 ! 4420: 371. SIV Simian immunodeficiency virus 31 23 106170 ! 4421: 372. SIV Simian immunodeficiency virus 1 1 7759 ! 4422: 373. SIV Simian immunodeficiency virus 3 3 9130 ! 4423: 374. SLO St. Louis encephalitis virus 8 8 5391 ! 4424: 375. SMF Simian foamy virus 1 1 3534 ! 4425: 376. SND Parainfluenza virus 39 31 59944 ! 4426: 377. SND Parainfluenza virus type 4A 2 2 3767 ! 4427: 378. SNV Spleen necrosis virus 9 8 3909 ! 4428: 379. SPV Spiroplasma virus 1 1 4421 ! 4429: 380. SRV Sapporo rat virus 2 2 5420 ! 4430: 381. SSH Snowshoe hare bunyavirus 11 10 6726 ! 4431: 382. STL Simian T-cell lymphotropic virus type I 3 3 8227 ! 4432: 383. STT St. Thomas 3 rotavirus 1 1 1062 ! 4433: 384. SUV Subterranean clover mottle virus 2 2 720 ! 4434: 385. SV4 Rhesus macaque polyomavirus 180 42 15361 ! 4435: 386. SV5 Simian virus 5 4 4 5586 ! 4436: 387. SVC Spring viremia of carp virus 2 2 778 ! 4437: 388. SVD Swine vesicular disease virus 2 2 7475 ! 4438: 389. SYE Sonchus yellow net virus 3 3 2822 ! 4439: 390. TAC Tacaribe virus 4 3 10607 ! 4440: 391. TAS Tomato apical stunt viroid 3 2 723 ! 4441: 392. TBE Tick-borne encephalitis virus 7 5 32678 ! 4442: 393. TBR Tomato black ring virus 11 11 18222 ! 4443: 394. TBS Tomato bushy stunt virus 3 2 5172 ! 4444: 395. TBV Tick-borne virus 1 1 1586 ! 4445: 396. TCV Turnip crinkle virus 5 5 6433 ! 4446: 397. TEV Tobacco etch virus 4 3 21315 ! 4447: 398. TGE Transmissible gastroenteritis virus 14 9 20969 ! 4448: 399. TME Theiler's murine encephalomyelitis virus 4 4 26220 ! 4449: 400. TMG Tobacco mild green mosaic virus 3 2 7768 ! 4450: 401. TNC Tobacco necrosis virus 1 1 3660 ! 4451: 402. TNS Satellite tobacco necrosis virus 4 2 1380 ! 4452: 403. TOA Tomato aspermy virus 5 5 943 ! 4453: 404. TOS Tomato ringspot virus 2 2 3096 ! 4454: 405. TPM Tomato plant macho viroid 1 1 360 ! 4455: 406. TRS Tobacco ringspot virus 3 3 790 ! 4456: 407. TSV Tobacco streak virus 3 3 2525 ! 4457: 408. TVM Tobacco vein mottling virus 4 2 9892 ! 4458: 409. UST Ustilago maydis P6 virus 1 1 1234 ! 4459: 410. UUK Uukuniemi virus 2 2 4951 ! 4460: 411. VAC Vaccinia virus 97 88 389431 ! 4461: 412. VAR Variola virus 1 1 1274 ! 4462: 413. VAZ Varicella-zoster virus 11 7 131533 ! 4463: 414. VLV Visna virus 2 2 9690 ! 4464: 415. VSV Vesicular stomatitis virus 169 146 192746 ! 4465: 416. VYS Saccharomyces cerevisiae virus ScV1 1 1 819 ! 4466: 417. WCP White clover mosaic virus 4 3 13303 ! 4467: 418. WDV Wheat dwarf virus 2 2 2829 ! 4468: 419. WHV Woodchuck hepatitis virus 7 7 19239 ! 4469: 420. WMS Woolly monkey sarcoma virus 2 1 1431 ! 4470: 421. WNF West Nile virus 7 4 11434 ! 4471: 422. WTV Wound tumor virus 11 9 14409 ! 4472: 423. YFV Flavivirus febricis 5 3 22289 ! 4473: 424. ZYM Zucchini yellow mosaic virus 1 1 1374 ! 4474: ! 4475: Total 4751 3707 6439492 ! 4476: ! 4477: PHAGE ! 4478: ! 4479: Key Name Reports Entries Bases ! 4480: ------------------------------------------------------------------------------- ! 4481: 1. AL3 Bacteriophage alpha3 7 5 1299 ! 4482: 2. BAZ Bacteriophage Z 1 1 370 ! 4483: 3. BBF Bacteriophage BF23 3 3 1434 ! 4484: 4. BEO Corynebacteriophage omega 1 1 1880 ! 4485: 5. BET Corynebacteriophage beta 3 2 4162 ! 4486: 6. BEU Corynebacteriophage gamma 2 2 139 ! 4487: 7. BFR Bacteriophage fr 4 4 2053 ! 4488: 8. BM2 Bacteriophage PM2 3 3 1025 ! 4489: 9. BNF Bacteriophage NF 6 5 3258 ! 4490: 10. BO1 Bacteriophage Bo1 1 1 205 ! 4491: 11. BP2 Bacteriophage P21 2 2 191 ! 4492: 12. BPH Bacteriophage phi-11 2 2 2041 ! 4493: 13. BT1 Bacteriophage T1 1 1 1091 ! 4494: 14. BU3 Bacteriophage U3 1 1 201 ! 4495: 15. BZ3 Bacteriophage Bz13 1 1 218 ! 4496: 16. C31 Bacteriophage phi-c31 1 1 3413 ! 4497: 17. CF1 Bacteriophage Cf16 1 1 500 ! 4498: 18. CP1 Bacteriophage Cp-1 5 3 3364 ! 4499: 19. CP5 Bacteriophage Cp-5 4 2 1850 ! 4500: 20. CP7 Bacteriophage Cp-7 5 3 4792 ! 4501: 21. CP9 Bacteriophage Cp-9 1 1 1253 ! 4502: 22. CPT Bacteriophage Cp-T1 1 1 730 ! 4503: 23. D18 Bacteriophage D108 9 7 3935 ! 4504: 24. F1C Bacteriophage f1 16 13 16373 ! 4505: 25. F2C Bacteriophage f2 1 1 58 ! 4506: 26. FR1 Bacteriophage fr1 1 1 205 ! 4507: 27. G14 Bacteriophage G14 1 1 113 ! 4508: 28. H19B Bacteriophage H19B 2 2 3301 ! 4509: 29. H30 Bacteriophage H30 1 1 1905 ! 4510: 30. H44 Bacteriophage H4489A 1 1 3222 ! 4511: 31. HB3 Bacteriophage HB-3 1 1 1319 ! 4512: 32. HP1 Bacteriophage HP1 4 2 10673 ! 4513: 33. IKE Bacteriophage Ike 3 2 7200 ! 4514: 34. J93 Bacteriophage 933J 2 1 1499 ! 4515: 35. JP3 Bacteriophage Jp34 2 2 1070 ! 4516: 36. JP5 Bacteriophage Jp501 1 1 205 ! 4517: 37. K5T Bacteriophage BK5-T 5 5 2070 ! 4518: 38. KU1 Bacteriophage Ku1 1 1 220 ! 4519: 39. L17 Bacteriophage L17 2 2 240 ! 4520: 40. L54 Bacteriophage L54a 1 1 1626 ! 4521: 41. LAM Bacteriophage lambda 120 24 55603 ! 4522: 42. LP7 Bacteriophage LP7 1 1 2110 ! 4523: 43. M13 Bacteriophage M13 12 8 8218 ! 4524: 44. M13MP7 Bacteriophage M13mp7 1 1 60 ! 4525: 45. M13MP8 Bacteriophage M13mp8 3 3 240 ! 4526: 46. M13MP9 Bacteriophage M13mp9 2 2 318 ! 4527: 47. M2Y Bacteriophage M2Y 2 2 336 ! 4528: 48. MS2 Bacteriophage MS2 16 8 4679 ! 4529: 49. OX2 Bacteriophage Ox2 2 2 2641 ! 4530: 50. P15 Bacteriophage phi-105 1 1 1306 ! 4531: 51. P16 Bacteriophage 16-3 1 1 720 ! 4532: 52. P18 Bacteriophage 186 1 1 3561 ! 4533: 53. P21 Bacteriophage phi-21 2 2 949 ! 4534: 54. P22 Bacteriophage P22 17 15 18461 ! 4535: 55. P29 Bacteriophage phi-29 18 15 29805 ! 4536: 56. P42 Bacteriophage 42D 2 2 1986 ! 4537: 57. P434 Bacteriophage 434 7 5 2933 ! 4538: 58. P80 Bacteriophage phi-80 7 6 4714 ! 4539: 59. P82 Bacteriophage 82 1 1 1200 ! 4540: 60. P93 Bacteriophage 933W 2 1 1661 ! 4541: 61. PA2 Bacteriophage PA-2 1 1 2816 ! 4542: 62. PF1D Bacteriophage Pf1 1 1 435 ! 4543: 63. PF3 Bacteriophage Pf3 4 4 12981 ! 4544: 64. PFD Bacteriophage fd 12 7 7334 ! 4545: 65. PFI Bacteriophage Fi 1 1 78 ! 4546: 66. PG4 Bacteriophage G4 12 8 7247 ! 4547: 67. PGA Bacteriophage Ga 4 4 4022 ! 4548: 68. PH1 Bacteriophage H1 1 1 98 ! 4549: 69. PH15 Bacteriophage phi-15 3 3 2352 ! 4550: 70. PH2 Bacteriophage 21 1 1 1688 ! 4551: 71. PH3 Bacteriophage phi-3T 2 2 3422 ! 4552: 72. PH5 Bacteriophage phi-105 6 5 3851 ! 4553: 73. PH6 Bacteriophage phi-6 7 7 13619 ! 4554: 74. PHC Lactococcus 1 bacteriophage 1 1 1654 ! 4555: 75. PHI Bacteriophage phi-H 1 1 2465 ! 4556: 76. PHK Bacteriophage phi-K 3 2 426 ! 4557: 77. PHM Bacteriophage phi-vML3 1 1 1208 ! 4558: 78. PK3 Bacteriophage K3 7 6 6630 ! 4559: 79. PM1 Bacteriophage M1 1 1 1714 ! 4560: 80. PM2 Bacteriophage M2 1 1 1820 ! 4561: 81. PMU Bacteriophage Mu 48 37 18049 ! 4562: 82. PP1 Bacteriophage P1 43 41 20939 ! 4563: 83. PP2 Bacteriophage P2 11 10 7614 ! 4564: 84. PP4 Bacteriophage P4 9 8 14159 ! 4565: 85. PP7 Bacteriophage P7 6 5 3315 ! 4566: 86. PQB Bacteriophage Q-beta 14 13 1866 ! 4567: 87. PR4 Bacteriophage PR4 2 2 240 ! 4568: 88. PR5 Bacteriophage PR5 2 2 238 ! 4569: 89. PR722 Bacteriophage PR722 2 2 240 ! 4570: 90. PRD1 Bacteriophage PRD1 9 9 9061 ! 4571: 91. PS2 Bacteriophage PBS2 1 1 720 ! 4572: 92. PSP Bacteriophage Sp 3 2 4542 ! 4573: 93. PST Bacteriophage ST 1 1 246 ! 4574: 94. PT2 Bacteriophage T2 9 6 8743 ! 4575: 95. PT3 Bacteriophage T3 21 18 16851 ! 4576: 96. PT4 Bacteriophage T4 120 67 128557 ! 4577: 97. PT5 Bacteriophage T5 29 26 26837 ! 4578: 98. PT6 Bacteriophage T6 4 3 2938 ! 4579: 99. PT7 Bacteriophage T7 41 18 47176 ! 4580: 100. PVK Bacteriophage VK 1 1 246 ! 4581: 101. PX1 Bacteriophage phi-X174 40 15 7239 ! 4582: 102. PZA Bacteriophage PZA 3 1 19366 ! 4583: 103. R17 Bacteriophage R17 9 7 463 ! 4584: 104. RB1 Bacteriophage RB18 1 1 674 ! 4585: 105. RB5 Bacteriophage RB51 1 1 700 ! 4586: 106. RHO Bacteriophage Rho11s 2 1 2187 ! 4587: 107. S13 Bacteriophage S13 2 1 5386 ! 4588: 108. SF6 Bacteriophage SF6 1 1 996 ! 4589: 109. SP1 Bacteriophage SPO1 20 20 6864 ! 4590: 110. SP2 Bacteriophage SPO2 1 1 3040 ! 4591: 111. SP6 Bacteriophage SP6 5 4 2948 ! 4592: 112. SP8 Bacteriophage SP82 5 5 1527 ! 4593: 113. SPB Bacteriophage SP-beta 4 3 2224 ! 4594: 114. SPC Bacteriophage S-phi-C 1 1 1377 ! 4595: 115. SPP Bacteriophage SPP1 2 2 1558 ! 4596: 116. SPR Bacteriophage SPR 3 1 2129 ! 4597: 117. ST1 Bacteriophage ST-1 2 2 844 ! 4598: 118. T12 Bacteriophage T12 1 1 1837 ! 4599: 119. TH1 Bacteriophage TH1 1 1 220 ! 4600: 120. TW1 Bacteriophage TW19 1 1 76 ! 4601: 121. TW2 Bacteriophage TW28 1 1 260 ! 4602: ! 4603: Total 880 593 682556 ! 4604: ! 4605: SYNTHETIC ! 4606: ! 4607: Key Name Reports Entries Bases ! 4608: ------------------------------------------------------------------------------- ! 4609: 1. ACC Cloning vector 1 1 1337 ! 4610: 2. AD2 Artificial gene 1 1 128 ! 4611: 3. ADB Artificial gene 8 8 573 ! 4612: 4. ADH Artificial gene 1 1 106 ! 4613: 5. ADL Artificial gene 3 3 273 ! 4614: 6. ADV Artificial gene 1 1 106 ! 4615: 7. ALM Avian myeloblastosis virus 1 1 337 ! 4616: 8. ALR Rous sarcoma virus 4 4 413 ! 4617: 9. AMH Artificial gene 1 1 234 ! 4618: 10. APH Artificial gene 1 1 400 ! 4619: 11. ARB Artificial gene 3 3 1180 ! 4620: 12. ARC Cloning vector 2 2 760 ! 4621: 13. ARE Artificial gene 1 1 255 ! 4622: 14. ARG Artificial gene 1 1 249 ! 4623: 15. ARH Artificial gene 5 5 440 ! 4624: 16. ARI Artificial gene 1 1 465 ! 4625: 17. ARL Artificial gene 2 2 424 ! 4626: 18. ARM Artificial gene 1 1 457 ! 4627: 19. ARN Cloning vector 1 1 333 ! 4628: 20. ARP Cloning vector 6 6 1079 ! 4629: 21. ARS Artificial gene 1 1 529 ! 4630: 22. ART Artificial gene 1 1 60 ! 4631: 23. ARY Artificial gene 1 1 264 ! 4632: 24. ATH Artificial gene 1 1 417 ! 4633: 25. BAM Artificial gene 1 1 85 ! 4634: 26. BKV BK Virus 6 3 1560 ! 4635: 27. BOV Bos taurus 18 18 6440 ! 4636: 28. BSF Cloning vector 2 2 54 ! 4637: 29. BSM Cloning vector 1 1 54 ! 4638: 30. BSU Bacillus subtilis 10 9 3921 ! 4639: 31. BTH Artificial gene 2 2 104 ! 4640: 32. CAR Artificial gene 1 1 3616 ! 4641: 33. CEL Caenorhabditis elegans 1 1 186 ! 4642: 34. CHK Gallus sp. 4 4 701 ! 4643: 35. CHS Artificial gene 1 1 478 ! 4644: 36. CMVMUS Artificial gene 1 1 1376 ! 4645: 37. COT Artificial gene 1 1 7876 ! 4646: 38. CRO Artificial gene 2 2 198 ! 4647: 39. CVC Cloning vector 1 1 46 ! 4648: 40. CVE Cloning vector 1 1 60 ! 4649: 41. CVJ Cloning vector 5 5 390 ! 4650: 42. CVK Cloning vector 1 1 120 ! 4651: 43. CYN Artificial gene 1 1 282 ! 4652: 44. DRO Drosophila sp. 4 4 4200 ! 4653: 45. E6V Artificial gene 2 2 206 ! 4654: 46. ECO Escherichia coli 124 111 24710 ! 4655: 47. EGF Artificial gene 1 1 299 ! 4656: 48. ERY Artificial gene 1 1 217 ! 4657: 49. EXP Cloning vector 2 2 123 ! 4658: 50. EZZ Cloning vector 1 1 60 ! 4659: 51. FCN Artificial gene 1 1 42 ! 4660: 52. FCS Cloning vector 2 2 136 ! 4661: 53. FLA Artificial gene 1 1 69 ! 4662: 54. FLU Influenza virus 6 6 861 ! 4663: 55. FSB Artificial gene 2 2 747 ! 4664: 56. GFA Artificial gene 1 1 176 ! 4665: 57. HAL Artificial gene 4 3 1633 ! 4666: 58. HBV Hepatitis B virus 3 3 315 ! 4667: 59. HCY Artificial gene 1 1 313 ! 4668: 60. HET Hetropolymeric DNA 2 2 594 ! 4669: 61. HIR Artificial gene 1 1 220 ! 4670: 62. HIV Artificial gene 6 6 879 ! 4671: 63. HL1 Artificial gene 4 4 238 ! 4672: 64. HNR Artificial gene 1 1 90 ! 4673: 65. HPB Artificial gene 1 1 556 ! 4674: 66. HS1 Artificial gene 1 1 780 ! 4675: 67. HS2 Artificial gene 2 2 129 ! 4676: 68. HS5 Human cytomegalovirus 1 1 210 ! 4677: 69. HSV Herpes Simplex Virus 6 6 323 ! 4678: 70. HUM Artificial human gene 80 71 22856 ! 4679: 71. HY3 Plasmid pHY300PLK 1 1 4870 ! 4680: 72. IFH Cloning vector 1 1 63 ! 4681: 73. IL1 Artificial gene 1 1 88 ! 4682: 74. INS Artificial gene 1 1 232 ! 4683: 75. ISN Insertion element 6 6 378 ! 4684: 76. JRD Cloning vector 3 3 6852 ! 4685: 77. KAN Cloning vector 3 3 210 ! 4686: 78. KPN Klebsiella pneumoniae 2 2 354 ! 4687: 79. KY1 Artificial gene 1 1 171 ! 4688: 80. LAC Cloning vector 2 2 1173 ! 4689: 81. LAM Bacteriophgage lambda 4 4 336 ! 4690: 82. LET Artificial gene 1 1 212 ! 4691: 83. LGT Cloning vector lambda gt11 1 1 210 ! 4692: 84. LHM Artificial gene 1 1 232 ! 4693: 85. LOR Cloning vector 1 1 5614 ! 4694: 86. M13 Cloning vector M13 8 8 643 ! 4695: 87. M13MP7 Cloning vector M13mp7 2 2 120 ! 4696: 88. M13MP8 Cloning vector M13mp8 1 1 382 ! 4697: 89. M13MP9 Cloning vector M13mp9 1 1 60 ! 4698: 90. M13TG103 Cloning vector M13tg103 1 1 66 ! 4699: 91. M13TG114 Cloning vector M13tg114 1 1 60 ! 4700: 92. M13TG115 Cloning vector M13tg115 1 1 66 ! 4701: 93. M13TG117 Cloning vector M13tg117 1 1 63 ! 4702: 94. M13TG120 Cloning vector M13tg120 1 1 54 ! 4703: 95. M13TG130 Cloning vector M13tg130 1 1 93 ! 4704: 96. M13TG131 Cloning vector M13tg131 1 1 93 ! 4705: 97. MBO Artificial gene 1 1 91 ! 4706: 98. MBR Artificial gene 3 3 157 ! 4707: 99. MCA Cauliflower mosaic virus 2 2 139 ! 4708: 100. MCV Cucumber mosaic virus 5 5 284 ! 4709: 101. MHI Mouse-human hybrid 4 4 1574 ! 4710: 102. MLE Artificial gene 1 1 936 ! 4711: 103. MLF Artificial gene 1 1 213 ! 4712: 104. MLM Artificial gene 2 2 178 ! 4713: 105. MML Cloning vector 12 4 24042 ! 4714: 106. MNV Artificial gene 1 1 87 ! 4715: 107. MP7 Artificial gene 2 1 69 ! 4716: 108. MP8 Artificial gene 2 1 60 ! 4717: 109. MP9 Artificial gene 2 1 60 ! 4718: 110. MS2 Artificial gene 1 1 100 ! 4719: 111. MSM Artificial gene 2 2 331 ! 4720: 112. MUS Mus musculus 38 38 4298 ! 4721: 113. NEU Artificial gene 2 2 171 ! 4722: 114. NNL Plasmid pNNL 1 1 815 ! 4723: 115. NPA Autographa californica nuclear polyhedrosis virus ! 4724: 3 3 922 ! 4725: 116. OVC Artificial gene 1 1 738 ! 4726: 117. P17X Plasmid pACYC177 7 6 4190 ! 4727: 118. P18X Plasmid pACYC184 5 4 4593 ! 4728: 119. P23 Artificial gene 1 1 119 ! 4729: 120. PAC Cloning vector 1 1 83 ! 4730: 121. PAH Artificial gene 2 2 107 ! 4731: 122. PBD Cloning vector 1 1 79 ! 4732: 123. PBG Cloning vector 6 3 12379 ! 4733: 124. PBR Plasmid pBR322 43 23 7123 ! 4734: 125. PBR313 Plasmid pBR313 1 1 200 ! 4735: 126. PBR322SV Plasmid pBR322/SV40 hybrid 5 5 209 ! 4736: 127. PBR325 Plasmid pBR325 3 3 319 ! 4737: 128. PBR327 Plasmid pBR327 3 3 3334 ! 4738: 129. PBR329 Plasmid pBR329 1 1 4150 ! 4739: 130. PBR345 Plasmid pBR345 2 2 1024 ! 4740: 131. PBRH4 Plasmid pBRH4 1 1 71 ! 4741: 132. PCE Cloning vector 1 1 510 ! 4742: 133. PCG86 Plasmid pCG86 2 2 654 ! 4743: 134. PCZ Plasmid pCZ 2 2 208 ! 4744: 135. PDPL Plasmid PDPL13 1 1 79 ! 4745: 136. PEA Artificial gene 1 1 1004 ! 4746: 137. PEM Cloning vector pEMBL8m 4 2 7878 ! 4747: 138. PES Cloning vector 1 1 99 ! 4748: 139. PF1 Bacteriophage f1 1 1 254 ! 4749: 140. PFD Artificial gene 1 1 85 ! 4750: 141. PFE Plasmid pFE 2 2 180 ! 4751: 142. PFH Plasmid pFH 1 1 120 ! 4752: 143. PFL Cloning vector 2 1 4588 ! 4753: 144. PFR Plasmid pFR 4 4 341 ! 4754: 145. PFX Artificial gene 2 1 3627 ! 4755: 146. PHP Plasmid pHP45 1 1 155 ! 4756: 147. PHS Plamsid pHS 3 3 2877 ! 4757: 148. PHV100 Cloning vector 1 1 396 ! 4758: 149. PHV33 Artificial gene 13 13 650 ! 4759: 150. PIC Plasmid pIC 5 5 477 ! 4760: 151. PIG Artificial pig gene 3 3 440 ! 4761: 152. PIP1088 Plasmid pIP1088 2 2 142 ! 4762: 153. PIVX Cloning vector pi-VX 1 1 902 ! 4763: 154. PJSC73 Plasmid pJSC73 1 1 3564 ! 4764: 155. PK18 Cloning vector 1 1 2661 ! 4765: 156. PKN Plasmodium knowlesi 2 1 360 ! 4766: 157. PKT Artificial gene 3 3 264 ! 4767: 158. PKU Cloning vector 3 2 7825 ! 4768: 159. PL2 Artificial gene 2 2 240 ! 4769: 160. PL5 Artificial gene 2 2 310 ! 4770: 161. PLB Cloning vector 1 1 852 ! 4771: 162. PLF Cloning vector 2 1 3641 ! 4772: 163. PLY Artificial gene 1 1 66 ! 4773: 164. PMB9 Cloning vector 1 1 138 ! 4774: 165. PMC1843 Plasmid pMC1843 1 1 62 ! 4775: 166. PMK20 Artificial gene 2 1 4028 ! 4776: 167. PMT Cloning vector 1 1 2854 ! 4777: 168. PMU Artificial gene 4 4 576 ! 4778: 169. POG Cloning vector 1 1 352 ! 4779: 170. POL Artificial gene 2 2 129 ! 4780: 171. POLY Cloning vector 6 3 6226 ! 4781: 172. PORI17 Plasmid pOri17 2 2 490 ! 4782: 173. PPI Cloning vector 1 1 4734 ! 4783: 174. PPUC Cloning vector 1 1 75 ! 4784: 175. PQB Artificial gene 1 1 64 ! 4785: 176. PRK Cloning vector 2 2 839 ! 4786: 177. PRT Artificial gene 1 1 711 ! 4787: 178. PRW1707 Plasmid pRW1707 1 1 66 ! 4788: 179. PRW1718 Plasmid pRW1718 1 1 72 ! 4789: 180. PRW1724 Plasmid pRW1724 1 1 66 ! 4790: 181. PRW1725 Plasmid pRW1725 1 1 66 ! 4791: 182. PSE Artificial gene 2 2 139 ! 4792: 183. PSI Cloning vector 1 1 81 ! 4793: 184. PSKS104 Plasmid pSKS104 1 1 69 ! 4794: 185. PSKS105 Plasmid pSKS105 1 1 60 ! 4795: 186. PSKS106 Plasmid pSKS106 1 1 60 ! 4796: 187. PSKS107 Plasmid pSKS107 1 1 46 ! 4797: 188. PSMF Cloning vector 2 2 259 ! 4798: 189. PSP Cloning vector 3 3 215 ! 4799: 190. PSR Artificial gene 1 1 138 ! 4800: 191. PSS Cloning vector 2 2 475 ! 4801: 192. PT4 Bacteriophage T4 4 4 725 ! 4802: 193. PT7 Bacteriophage T7 2 2 282 ! 4803: 194. PTK Plasmid pTK 1 1 68 ! 4804: 195. PTL Cloning vector 1 1 51 ! 4805: 196. PTN Plasmid pTN 1 1 355 ! 4806: 197. PTR Plasmid pTr 1 1 137 ! 4807: 198. PTU Artificial gene 4 4 883 ! 4808: 199. PTZ Plasmid pTZ12 1 1 2517 ! 4809: 200. PUC Cloning vector 2 1 3914 ! 4810: 201. PUEX Cloning vector 2 1 6728 ! 4811: 202. PVH51 Plasmid pVH51 1 1 3847 ! 4812: 203. PX1 Bacteriophage phi-X174 1 1 59 ! 4813: 204. PYM Artificial gene 1 1 252 ! 4814: 205. PYR Artificial gene 1 1 158 ! 4815: 206. PZ189 Cloning vector 1 1 153 ! 4816: 207. R38 Plasmid R388 1 1 1167 ! 4817: 208. R67 Plasmid R67 1 1 353 ! 4818: 209. R6K Cloning vector 2 2 176 ! 4819: 210. RAD Artificial gene 1 1 955 ! 4820: 211. RAT Rattus sp. 14 13 1864 ! 4821: 212. RET Cloning vector 2 2 780 ! 4822: 213. RMT Artificial gene 6 6 638 ! 4823: 214. RNA Artificial gene 1 1 328 ! 4824: 215. ROT Artificial gene 2 2 141 ! 4825: 216. RRNA Artificial gene 1 1 136 ! 4826: 217. RSC1 Plasmid Rsc13 3 1 7894 ! 4827: 218. RSF1050 Plasmid RSF1050 1 1 104 ! 4828: 219. RSP Artificial gene 1 1 100 ! 4829: 220. RSV Rous Sarcoma Virus 3 3 450 ! 4830: 221. RTS Artificial gene 1 1 280 ! 4831: 222. S100 Artificial gene 1 1 283 ! 4832: 223. SAA Bacteriophage sigma-11-AA248 1 1 83 ! 4833: 224. SAU Staphylcoccus aureus 1 1 60 ! 4834: 225. SFV Semliki forest virus 3 3 171 ! 4835: 226. SHI Cloning vector 3 3 428 ! 4836: 227. SHU Artificial gene 3 3 272 ! 4837: 228. SIN Cloning vector 2 2 596 ! 4838: 229. SLM Artificial gene 10 10 817 ! 4839: 230. SOMINS Artificial gene 1 1 226 ! 4840: 231. SOP Artificial gene 1 1 111 ! 4841: 232. SP02 Bacteriophage SP02 1 1 487 ! 4842: 233. SP6 Artificial gene 1 1 78 ! 4843: 234. SPI Artificial gene 2 2 295 ! 4844: 235. SRU Artificial gene 1 1 252 ! 4845: 236. STA Artificial gene 4 4 619 ! 4846: 237. STM Artificial gene 1 1 71 ! 4847: 238. STY Salmonella sp. 1 1 135 ! 4848: 239. SV4 Simian Virus 40 13 13 2415 ! 4849: 240. SVA Artificial gene 1 1 213 ! 4850: 241. SYN Plasmid pDSP1 161 146 49857 ! 4851: 242. SYN Synthetic sequence 51 48 131042 ! 4852: 243. T13 Artificial gene 1 1 223 ! 4853: 244. T4L Artificial gene 1 1 518 ! 4854: 245. TAC Artificial gene 1 1 842 ! 4855: 246. THA Artificial gene 1 1 641 ! 4856: 247. THY Plasmid pUC8 2 1 503 ! 4857: 248. TI Plasmid Ti 4 3 6552 ! 4858: 249. TN3 Artificial gene 1 1 110 ! 4859: 250. TNP Artificial gene 1 1 192 ! 4860: 251. TNS Cloning vector 2 2 144 ! 4861: 252. TOB Artificial gene 1 1 788 ! 4862: 253. TRN28 Cloning vector 2 2 284 ! 4863: 254. TRN3 Transposon Tn3 10 10 1119 ! 4864: 255. TRN5 Artificial gene 1 1 80 ! 4865: 256. TRNB Artificial gene 1 1 84 ! 4866: 257. TU4 Cloning vector 2 2 350 ! 4867: 258. VAC Cloning vector 4 4 683 ! 4868: 259. VCH Artificial gene 1 1 444 ! 4869: 260. VEC Cloning vector 1 1 143 ! 4870: 261. VTR Cloning vector 1 1 148 ! 4871: 262. WHL Artificial gene 1 1 507 ! 4872: 263. XEL Xenopus laevis 13 13 1227 ! 4873: 264. YSC Saccharomyces cerevisiae 41 40 10154 ! 4874: 265. YSE Artificial gene 2 1 1795 ! 4875: 266. YST Artificial gene 1 1 82 ! 4876: 267. ZMO Artificial gene 3 3 740 ! 4877: ! 4878: Total 1129 1028 516186 ! 4879: ! 4880: UNANNOTATED ! 4881: ! 4882: Key Name Reports Entries Bases ! 4883: ------------------------------------------------------------------------------- ! 4884: 1. Unidentified 4909 3756 4792964 ! 4885: ! 4886: Total 4909 3756 4792964
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